PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24630.9
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 811aa    MW: 89880.9 Da    PI: 5.7751
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24630.9genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22157258199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OMERI04G24630.9 157 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 246
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OMERI04G24630.9 247 EKNQLLLGIRRA 258
                      99999****997 PP
2Auxin_resp69.11.4e-23283338155
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedss 55 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss
  OMERI04G24630.9 283 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESS 338
                      79*******************************986599***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-48142286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41149272IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-21156257No hitNo description
PROSITE profilePS5086312.224157259IPR003340B3 DNA binding domain
PfamPF023627.5E-21157258IPR003340B3 DNA binding domain
SMARTSM010191.4E-23157259IPR003340B3 DNA binding domain
PfamPF065077.0E-19283338IPR010525Auxin response factor
PfamPF023091.5E-7705796IPR033389AUX/IAA domain
SuperFamilySSF542771.9E-7708787No hitNo description
PROSITE profilePS5174524.037712796IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG  60
PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET  120
DEVYAQMTLQ PLNPQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE  180
RVFPPLDFTQ QPPAQELIAR DIHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  240
VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR  300
ASPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVG WDESTAGERP PRVSLWEIEP  360
LTTFPMYPSL FPLRVKHPWY SGVASLHDDS NALMWLRGVA GEGGFQSLNF QSPGIGSWGQ  420
QRLHPSLLSS DHDQYQAVVA AAAASQSGGY LKQQFLHLQQ PMQSPQEHCN LNPLLQQQIL  480
QQASQQQIIN PDAQNIQTML SPSAIQQQLQ QLQQMQQVQN DQKQKIQPDQ SYQVPTSAVL  540
PSPTSLPSHL REKFGFSDPN ANSSSFITSS SSDNMLDSSF LQGSSKAVDL SRFNQPVASE  600
QQQQQQAWKQ KFMGSQSVSF GGSVLHNSPT SKDGSVENKI GRDVQNQSLF SPQVDSSSLL  660
YNMVPNLTSN VSDGNLSTIP SGSTYLQNAM YGCLDDSSGL LQNTGENDPA TRTFVKVYKS  720
GSVGRSLDIT RFSNYAELRE ELGQMFGIKG QLDDPDRSGW QLVFVDREND VLLLGDDPWE  780
SFVNSVWYIK ILSPEDVHKM GKQGNDPRYL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1404635947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712980.0AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds.
GenBankAK0671500.0AK067150.1 Oryza sativa Japonica Group cDNA clone:J013096O18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0E0DJZ10.0A0A0E0DJZ1_9ORYZ; Auxin response factor
STRINGONIVA04G27670.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6