PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 159aa    MW: 18220.9 Da    PI: 9.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-13441202295
                      H.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  22 faeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + ++++++vv+
  OMERI04G24980.1  44 DAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDMFIIYKS-SESGKFVVR 120
                      57788887788899*******7778*******9989999999**99.9*******************43.377777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.30E-1342120No hitNo description
Gene3DG3DSA:2.40.330.101.8E-1643122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-1144118IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-1046120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGKRKLGEKG ERKKKVVVGM DPPIVFRSDM ESEKNDEPDQ TPRDAEAHLP ALHQREGVTL  60
KMDDFKFETT WNFKYRFWPN NKSRMYVLES TGGFVKHHGL QTGDMFIIYK SSESGKFVVR  120
GEKAIKPNAI MPVVDCSCKN ELNKSEECGF TISLQTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-274512427106B3 domain-containing transcription factor FUS3
6j9b_D1e-274512427106B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728741e-140AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.17e-86putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC46e-87Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0E0DK511e-115A0A0E0DK51_9ORYZ; Uncharacterized protein
STRINGOGLUM04G29470.16e-86(Oryza glumipatula)
STRINGOS04T0676650-003e-85(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-30B3 family protein