PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G25800.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 471aa MW: 51412.2 Da PI: 8.7196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G25800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.4e-06	244	266	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H OMERI04G25800.1 244 SCPDCGEIFVRPDSLHLHQSIrH 266 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	243	266	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.871	243	271	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.59E-21	268	470	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-13	270	470	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MVEPGRARET KVTASASNSA GSDAAVMKKK KKKLVVASRK VDEKDKKQVD YKCTRSSRDE 60 CCKVESRHQC TEPESPSYRL ALRSLFSCRN SSSHAGHHHH HRAADGKKLG CNSASICKVK 120 QDNPMQQHMR RAEDELKVKD KPPVAEPYCK RRASVSACNI SSERSVKKSS VKQQQQEASS 180 SLQSSASISA SSCSSTAGGG GSFRGMQQLS LRRLSGCYEC HMVVDPISGV FRDSSSSMRA 240 TICSCPDCGE IFVRPDSLHL HQSIRHAVSE LGAEDTSRNI ISIIFQSSWL KKQSPVCAID 300 RILKVHNAAR TLARFDDYRA AVKAKARRHP RCTADGNELL RFHCATLSCD LGLHGATHLC 360 DLSCAACAII RHGFRPPAPG AGIRTMATSG RAHDAVVSSG SEGDRRAMLV CRVIAGRVKR 420 EEAAATEEEE EEEEEYDSVA GTTPGLYSNL DELDVFNPTA ILPCFVVVYR A

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MVEPGRARET KVTASASNSA GSDAAVMKKK KKKLVVASRK VDEKDKKQVD YKCTRSSRDE  60
CCKVESRHQC TEPESPSYRL ALRSLFSCRN SSSHAGHHHH HRAADGKKLG CNSASICKVK  120
QDNPMQQHMR RAEDELKVKD KPPVAEPYCK RRASVSACNI SSERSVKKSS VKQQQQEASS  180
SLQSSASISA SSCSSTAGGG GSFRGMQQLS LRRLSGCYEC HMVVDPISGV FRDSSSSMRA  240
TICSCPDCGE IFVRPDSLHL HQSIRHAVSE LGAEDTSRNI ISIIFQSSWL KKQSPVCAID  300
RILKVHNAAR TLARFDDYRA AVKAKARRHP RCTADGNELL RFHCATLSCD LGLHGATHLC  360
DLSCAACAII RHGFRPPAPG AGIRTMATSG RAHDAVVSSG SEGDRRAMLV CRVIAGRVKR  420
EEAAATEEEE EEEEEYDSVA GTTPGLYSNL DELDVFNPTA ILPCFVVVYR A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK099856	0.0	AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634280.1	0.0	uncharacterized protein LOC4337494
TrEMBL	A0A0E0DKI4	0.0	A0A0E0DKI4_9ORYZ; Uncharacterized protein
STRING	OMERI04G25540.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-86	C2H2-like zinc finger protein