PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G01730.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 143aa MW: 14828.8 Da PI: 4.7543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G01730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.4	2.5e-19	11	67	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + l++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+la++++e OMERI05G01730.1 11 SWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAE 67 5799*************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.242	1	68	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-17	11	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MASSPLMSSS SWLQELPEEQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVNDLKAQ 60 LARAHAELAG ARAQHAHLVA LLCMEMAAAA PPQHPTTTTA AAAYCAAVGG GASPAAPVDA 120 LYVVDGAAMQ ASPIGWVDEP LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	10	68	53	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	10	68	53	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079021	0.0	AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBank	AC093089	0.0	AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	1e-75	LOB domain-containing protein 1
TrEMBL	A0A0E0DLC1	1e-97	A0A0E0DLC1_9ORYZ; Uncharacterized protein
STRING	OMERI05G01700.1	2e-98	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-20	LOB domain-containing protein 1