PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G01740.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 89aa MW: 9406.91 Da PI: 8.8712

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G01740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.7	1.3e-21	38	85	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+a OMERI05G01740.1 38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQA 85 7*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.974	37	89	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-21	38	85	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MGSSSDTTCT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP 60 PTEPHKFTTA HRVFGASNII KLLQASSYC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-19	28	84	1	57	LOB family transfactor Ramosa2.1
5ly0_B	2e-19	28	84	1	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	1e-144	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	3e-53	LOB domain-containing protein 1
Swissprot	Q9SK08	8e-28	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0E0DLC2	4e-56	A0A0E0DLC2_9ORYZ; Uncharacterized protein
STRING	OMERI05G01710.1	6e-57	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	5e-26	LOB domain-containing protein 11