PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G01980.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1648aa MW: 178754 Da PI: 6.8841

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G01980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	795	837	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ OMERI05G01980.1 795 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 837 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-13	778	840	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	791	842	IPR017884	SANT domain
SMART	SM00717	4.8E-7	792	840	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-6	795	837	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-5	795	839	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	1000	1051	IPR017884	SANT domain
SMART	SM00717	6.6E-4	1001	1049	IPR001005	SANT/Myb domain
CDD	cd00167	0.00126	1005	1043	No hit	No description
SuperFamily	SSF46689	1.48E-8	1005	1051	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1648 aa Download sequence Send to blast
MRRPELGIRA GWTTTTTTTT PWMPPPPPDR RDFLYRDGRR HDGDPLPPPA PTPPRWRDSP 60 YHPPPPPPPP LRDHSRPSPR RTPSSASSDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL 120 DDDSGGGYKG FSRYGGGGGG SRRDGRDMRG SYRRSPFRGY GSDFSRNHQE HPPPPLRRSP 180 LRSVAVPMSY DPPGDRADRG DRDHHHRVTP WRPLRRRESR SDAADAAGAG PVPVGQAAAA 240 AASEKDVSAR SSAVAAPQVS EEEAPRKKPR LGWGQGLAKY EKQKVQGPAE SAEAVAEGSP 300 TATEQKGVTH TPAPAPCVSP VTAPSPAPCA SPVAAPSPAP CASPVAAPSP ALPCKSPVPE 360 DKSCELTANT VTEFNKNIPG PDVQACNNEV PTKLDQLEGD PIDSLAKVLS ELVQHEDSCS 420 GDSKRLSNVS KLLLLKESIS KELEKTELEI DSLEGELKSV NVEARNRTLK DPPTAVTYAQ 480 NPLPSPVKEQ GELTPSPKIS MEQDADVKGS ELMEVETAQA HNAKAVSSEE SVACPGVAPG 540 QVPAAADVIP SDPCGKTGSG IDVDIEQREE NPCQENFNAM KADGSSDLAT RPCSYRDVKY 600 NLMDQIIAAN RSEAKKNSQL LFKPVPADRS NLDLLASSYL SSQMKNDVII KKKHAILKNR 660 QRFKEQILTF KFRVLRHLWK EDVRLLSVRK QRSKSHKRTD QSNRSSQSGS QRQRSSNRSR 720 LAVPAGNLST FPITEMSGVA KKLFSEFQLK RCRNYLKMPA LIVDEKEKAG AKFVSKNGLV 780 EDPVSVEKER ALINPWIQEE KEIFMEKLAT FGKDFSKISS FLQHKTTADC IEFYYKHHKS 840 DSFREVKKLL DLRQQQQPAS NYLGAVSGKK WNPEANAASL DMLGVATEVA AQGLEYVNEV 900 KKNSAKSILR TVCGVDNSTK GSEKDSVGDV SLHERESVAA DVLAGICGTL SPEGMGSCIT 960 SSADPGQKIG IISRMEHLLT PEADKNFDDD GTLSDQECEV DIVDWNDDEK SSFIEAMNRY 1020 GKDFARISSY VKSKSFEQCK VFFSKARKSL GLDLIHQGAA DAGFPTGDAN GGRSGTDGAC 1080 IAEMDSAICS AQSCPKVEID ACPVSDGEIQ GHNPLSYIAS RQPEADKSNM PDVVDINVEE 1140 GESKAEKDCS ILVDHKQLRE DTNQTSCACI DINCPESTDK LQDIEDVTPV NMHGDDLMAT 1200 SVEQAVAAHV ESRSSLHSEG IGIDFSRIEG CSHESTIGKG GKSTPSVCLP AANGVSKENI 1260 IHFSNMDGAS SISPAFTSNY QQSKLADPIQ SKPKPLTPKD LMPVQFSSSL PDPTSICFEG 1320 IAAITTPNFE DHGNRASIAS GAKDVNMFPT FKDQSSNRHD ALFSNVDGYM QQRRNNHFGT 1380 EVCGLSESTG ISQSDQFTVS KFQNGRPSSL GLSNGNLGVL STGRREEARE GLFRPCSVKT 1440 SAGNEEQQKR PGDVKLFGQI LSHQSSLQSS GSSVHGSKSK PPSPKVDKSA SSRLLSNPRE 1500 RLVYSSRPPI TANLGLEERA MRSFDHMDGR TIQPEPMVMV AKCQRPSAGV PVYSTKNGAL 1560 SVFAEFQQPS MPPHTSDHKL LENFADLHKR NGIELLSGFQ QPGRLGGAGV LVSGVSDPVA 1620 ALKAQYGSGS KMLSSSNDVD TWKDIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1648 aa Download sequence Send to blast

MRRPELGIRA GWTTTTTTTT PWMPPPPPDR RDFLYRDGRR HDGDPLPPPA PTPPRWRDSP  60
YHPPPPPPPP LRDHSRPSPR RTPSSASSDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL  120
DDDSGGGYKG FSRYGGGGGG SRRDGRDMRG SYRRSPFRGY GSDFSRNHQE HPPPPLRRSP  180
LRSVAVPMSY DPPGDRADRG DRDHHHRVTP WRPLRRRESR SDAADAAGAG PVPVGQAAAA  240
AASEKDVSAR SSAVAAPQVS EEEAPRKKPR LGWGQGLAKY EKQKVQGPAE SAEAVAEGSP  300
TATEQKGVTH TPAPAPCVSP VTAPSPAPCA SPVAAPSPAP CASPVAAPSP ALPCKSPVPE  360
DKSCELTANT VTEFNKNIPG PDVQACNNEV PTKLDQLEGD PIDSLAKVLS ELVQHEDSCS  420
GDSKRLSNVS KLLLLKESIS KELEKTELEI DSLEGELKSV NVEARNRTLK DPPTAVTYAQ  480
NPLPSPVKEQ GELTPSPKIS MEQDADVKGS ELMEVETAQA HNAKAVSSEE SVACPGVAPG  540
QVPAAADVIP SDPCGKTGSG IDVDIEQREE NPCQENFNAM KADGSSDLAT RPCSYRDVKY  600
NLMDQIIAAN RSEAKKNSQL LFKPVPADRS NLDLLASSYL SSQMKNDVII KKKHAILKNR  660
QRFKEQILTF KFRVLRHLWK EDVRLLSVRK QRSKSHKRTD QSNRSSQSGS QRQRSSNRSR  720
LAVPAGNLST FPITEMSGVA KKLFSEFQLK RCRNYLKMPA LIVDEKEKAG AKFVSKNGLV  780
EDPVSVEKER ALINPWIQEE KEIFMEKLAT FGKDFSKISS FLQHKTTADC IEFYYKHHKS  840
DSFREVKKLL DLRQQQQPAS NYLGAVSGKK WNPEANAASL DMLGVATEVA AQGLEYVNEV  900
KKNSAKSILR TVCGVDNSTK GSEKDSVGDV SLHERESVAA DVLAGICGTL SPEGMGSCIT  960
SSADPGQKIG IISRMEHLLT PEADKNFDDD GTLSDQECEV DIVDWNDDEK SSFIEAMNRY  1020
GKDFARISSY VKSKSFEQCK VFFSKARKSL GLDLIHQGAA DAGFPTGDAN GGRSGTDGAC  1080
IAEMDSAICS AQSCPKVEID ACPVSDGEIQ GHNPLSYIAS RQPEADKSNM PDVVDINVEE  1140
GESKAEKDCS ILVDHKQLRE DTNQTSCACI DINCPESTDK LQDIEDVTPV NMHGDDLMAT  1200
SVEQAVAAHV ESRSSLHSEG IGIDFSRIEG CSHESTIGKG GKSTPSVCLP AANGVSKENI  1260
IHFSNMDGAS SISPAFTSNY QQSKLADPIQ SKPKPLTPKD LMPVQFSSSL PDPTSICFEG  1320
IAAITTPNFE DHGNRASIAS GAKDVNMFPT FKDQSSNRHD ALFSNVDGYM QQRRNNHFGT  1380
EVCGLSESTG ISQSDQFTVS KFQNGRPSSL GLSNGNLGVL STGRREEARE GLFRPCSVKT  1440
SAGNEEQQKR PGDVKLFGQI LSHQSSLQSS GSSVHGSKSK PPSPKVDKSA SSRLLSNPRE  1500
RLVYSSRPPI TANLGLEERA MRSFDHMDGR TIQPEPMVMV AKCQRPSAGV PVYSTKNGAL  1560
SVFAEFQQPS MPPHTSDHKL LENFADLHKR NGIELLSGFQ QPGRLGGAGV LVSGVSDPVA  1620
ALKAQYGSGS KMLSSSNDVD TWKDIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-16	753	844	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-16	753	844	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0E0DLF3	0.0	A0A0E0DLF3_9ORYZ; Uncharacterized protein
STRING	OMERI05G01950.3	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	4e-76	MYB family protein