PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G01980.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1619aa    MW: 176175 Da    PI: 6.8372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G01980.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07766808347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W +eE e++ +  + +G++ +++I++ ++ ++t  +c+++++k+
  OMERI05G01980.2 766 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 808
                      899***************99.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-13749811IPR009057Homeodomain-like
PROSITE profilePS5129314.547762813IPR017884SANT domain
SMARTSM007174.8E-7763811IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5766810IPR009057Homeodomain-like
PfamPF002499.5E-6766808IPR001005SANT/Myb domain
PROSITE profilePS5129313.7289711022IPR017884SANT domain
SMARTSM007176.6E-49721020IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-89761022IPR009057Homeodomain-like
CDDcd001670.001249761014No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1619 aa     Download sequence    Send to blast
MRRPELGIRA GWTTTTTTTT PWMPPPPPDR RDFLYRDGRR HDGDPLPPPA PTPPRWRDSP  60
YHPPPPPPPP LRDHSRPSPR RTPSSASSDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL  120
DDDSGGGYKG FSRYGGGGGG SRRDGRDMRG SYRRSPFRGY GSDFSRNHQE HPPPPLRRSP  180
LRSVAVPMSY DPPGDRADRG DRDHHHRVTP WRPLRRRESR SDAADAAGAG PVPVGQAAAA  240
AASEKDVSAR SSAVAAPQVS EEEAPRKKPR LGWGQGLAKY EKQKVQGPAE SAEAVAEGSP  300
TATEQKGVTH TPAPAPCVSP VTAPSPAPFP EDKSCELTAN TVTEFNKNIP GPDVQACNNE  360
VPTKLDQLEG DPIDSLAKVL SELVQHEDSC SGDSKRLSNV SKLLLLKESI SKELEKTELE  420
IDSLEGELKS VNVEARNRTL KDPPTAVTYA QNPLPSPVKE QGELTPSPKI SMEQDADVKG  480
SELMEVETAQ AHNAKAVSSE ESVACPGVAP GQVPAAADVI PSDPCGKTGS GIDVDIEQRE  540
ENPCQENFNA MKADGSSDLA TRPCSYRDVK YNLMDQIIAA NRSEAKKNSQ LLFKPVPADR  600
SNLDLLASSY LSSQMKNDVI IKKKHAILKN RQRFKEQILT FKFRVLRHLW KEDVRLLSVR  660
KQRSKSHKRT DQSNRSSQSG SQRQRSSNRS RLAVPAGNLS TFPITEMSGV AKKLFSEFQL  720
KRCRNYLKMP ALIVDEKEKA GAKFVSKNGL VEDPVSVEKE RALINPWIQE EKEIFMEKLA  780
TFGKDFSKIS SFLQHKTTAD CIEFYYKHHK SDSFREVKKL LDLRQQQQPA SNYLGAVSGK  840
KWNPEANAAS LDMLGVATEV AAQGLEYVNE VKKNSAKSIL RTVCGVDNST KGSEKDSVGD  900
VSLHERESVA ADVLAGICGT LSPEGMGSCI TSSADPGQKI GIISRMEHLL TPEADKNFDD  960
DGTLSDQECE VDIVDWNDDE KSSFIEAMNR YGKDFARISS YVKSKSFEQC KVFFSKARKS  1020
LGLDLIHQGA ADAGFPTGDA NGGRSGTDGA CIAEMDSAIC SAQSCPKVEI DACPVSDGEI  1080
QGHNPLSYIA SRQPEADKSN MPDVVDINVE EGESKAEKDC SILVDHKQLR EDTNQTSCAC  1140
IDINCPESTD KLQDIEDVTP VNMHGDDLMA TSVEQAVAAH VESRSSLHSE GIGIDFSRIE  1200
GCSHESTIGK GGKSTPSVCL PAANGVSKEN IIHFSNMDGA SSISPAFTSN YQQSKLADPI  1260
QSKPKPLTPK DLMPVQFSSS LPDPTSICFE GIAAITTPNF EDHGNRASIA SGAKDVNMFP  1320
TFKDQSSNRH DALFSNVDGY MQQRRNNHFG TEVCGLSEST GISQSDQFTV SKFQNGRPSS  1380
LGLSNGNLGV LSTGRREEAR EGLFRPCSVK TSAGNEEQQK RPGDVKLFGQ ILSHQSSLQS  1440
SGSSVHGSKS KPPSPKVDKS ASSRLLSNPR ERLVYSSRPP ITANLGLEER AMRSFDHMDG  1500
RTIQPEPMVM VAKCQRPSAG VPVYSTKNGA LSVFAEFQQP SMPPHTSDHK LLENFADLHK  1560
RNGIELLSGF QQPGRLGGAG VLVSGVSDPV AALKAQYGSG SKMLSSSNDV DTWKDIGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-16724815494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-16724815494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1297200.0AC129720.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0683F12, complete sequence.
GenBankAC1349310.0AC134931.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0079L11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639126.10.0uncharacterized protein LOC9268524
RefseqXP_015639127.10.0uncharacterized protein LOC9268524
RefseqXP_015639128.10.0uncharacterized protein LOC9268524
RefseqXP_015639129.10.0uncharacterized protein LOC9268524
TrEMBLA0A0E0DLF40.0A0A0E0DLF4_9ORYZ; Uncharacterized protein
STRINGOMERI05G01950.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.18e-87MYB family protein