PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G04320.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 228aa    MW: 24911.5 Da    PI: 8.5026
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G04320.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+e+++da  ++G + Wk+I   +  ++t+ q++s+ qk+
  OMERI05G04320.3 25 RERWSAEEHERFLDALILFGRD-WKRIEGFVA-TKTAIQIRSHAQKH 69
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-151975IPR009057Homeodomain-like
PROSITE profilePS5129416.7442074IPR017930Myb domain
SMARTSM007178.1E-102472IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.7E-152472IPR006447Myb domain, plants
PfamPF002491.4E-102569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-72569IPR009057Homeodomain-like
CDDcd001672.82E-82770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAMAAAAAG TKKKARKPYT ITRPRERWSA EEHERFLDAL ILFGRDWKRI EGFVATKTAI  60
QIRSHAQKHF LKARKFGLAG GLPPPLHPRR AALLRANAAA AAADMMPPPW LSSAGVQQGM  120
AGRPPACFST DEASFRPLIQ SSDDCSFIET PSCSGSGESW LADAAFFSQD ETILLPISPD  180
DMGFAQVYKF IGDVFGSGER RPVEAHLRRL QGMDPAISET LALEQIDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241442e-56AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAP0149612e-56AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-56CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-133protein REVEILLE 8
TrEMBLA0A0E0DMH91e-165A0A0E0DMH9_9ORYZ; Uncharacterized protein
STRINGOMERI05G04190.11e-161(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.14e-31MYB_related family protein