PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G07460.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 304aa    MW: 33057.4 Da    PI: 9.5625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G07460.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l ++v ++G+g W+tI +          R+  ++k++w+++
  OMERI05G07460.3  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.498160IPR017930Myb domain
SuperFamilySSF466899.72E-16258IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
PfamPF002491.4E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14556IPR009057Homeodomain-like
CDDcd116607.95E-21656No hitNo description
SMARTSM005267.8E-998175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.042112180IPR005818Linker histone H1/H5, domain H15
PfamPF005382.8E-6118172IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-10118186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-11118186IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006499Biological ProcessN-terminal protein myristoylation
GO:0010064Biological Processembryonic shoot morphogenesis
GO:0015693Biological Processmagnesium ion transport
GO:0040007Biological Processgrowth
GO:1903830Biological Processmagnesium ion transmembrane transport
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004379Molecular Functionglycylpeptide N-tetradecanoyltransferase activity
GO:0015095Molecular Functionmagnesium ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPNSMV  120
IEALCEIGDP NGSDVDAICH YIEQRHEVQA NFRRLLTAKL RRLIAAKKIE KIDRSYRITE  180
SYAAKVSQAN KSPSPKKDPA KPLKASQNLG SFAGTSPALE AAAAAAMKVA DAEAKSHLAN  240
EHMTEAERIF KLTEETESLV TLATEIYERC SRGEILTIMQ VAQSNFEFQS VSSNGSGTGS  300
TVLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622157.10.0single myb histone 4 isoform X2
SwissprotQ6WLH41e-108SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0E0DNR10.0A0A0E0DNR1_9ORYZ; Uncharacterized protein
STRINGOMERI05G07080.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-46MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]