PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G09560.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 337aa    MW: 37695.3 Da    PI: 5.2133
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G09560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.46.9e-2341138296
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      ++ fw +    ie ++  ++h lP+  +k++++  +d  m+sa++P++++k celf+ eltlr+w+ a++ +r  +  +dia+a+t t+ + fl
  OMERI05G09560.1  41 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFL 134
                      7789976523377777778999************************************************************************ PP

            NF-YC  93 vdiv 96 
                       ++ 
  OMERI05G09560.1 135 GNVL 138
                      8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.14E-1620134IPR009072Histone-fold
PfamPF008082.4E-863125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.2E-1863138IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQDYNTRSKG MAIPTKEEVE HNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE  60
HILPIDCVKN VIRPKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD  120
IAEAITTTES YHFLGNVLRS HRALGSTAPD IDISARKHIK LDQMTSLYHP TQEMQASHLA  180
GYPPHVPIYP PIGQMGTQHT LSPFAFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG  240
ATSIGGGSSS DAAIVAQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK  300
LHQEEKNIYS QDVAEEDMSN ESLEGSQKDE DLFLHAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.10.0uncharacterized protein LOC4338359
TrEMBLA0A0E0DPM90.0A0A0E0DPM9_9ORYZ; Uncharacterized protein
STRINGOMERI05G09100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-19nuclear factor Y, subunit C4