PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G12880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 558aa    MW: 57873.3 Da    PI: 8.0499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.95.8e-711585564374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfs 94 
                       L +cAea++++  + a+a La +  +as dgd++qR+aa f+eA+a+ + r + ++++al ps+ +  +     e+ +a++ f +++P+l ++
  OMERI05G12880.1 158 HLRRCAEALAASRPADADAELASIARMASADGDAVQRVAAAFAEAIARVVIRPWRGVSAALFPSDVAGGDalgAWEAEFARQSFLNLCPLLHLA 251
                      6889*********************************************************8888887777888888899999*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++ N+ Ile + +++ +Hi+D++  + ++W+ Ll+ La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++++e
  OMERI05G12880.1 252 AVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLHGLATRRaAVRPCLRLTIVHE----HKHFLAQAAQVLAAESDRHGVPLDLHI-VESSVE 340
                      ***************************************98867799*********....99************************9.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll.......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                      +l+l++L v+++ a+++ + lqlhrl+                         +++++s+ d++L+ +  lsP+ ++++e+ea+h  +sF +rf+
  OMERI05G12880.1 341 ALKLDALGVRSDHAVVIVSTLQLHRLVgagilstaappspaaaaggmaspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPSFTDRFA 434
                      ***********************************************9887778888899********************************** PP

             GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvksdg. 348
                      +al yy  lf s+e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ ++ ++ g 
  OMERI05G12880.1 435 SALPYYEQLFASMEEA-GAAAVERKAAERYLLKEEIKDVIACDQDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAARLPGGGe 527
                      *************887.7899**********************9988********************987765511444555556666554334 PP

             GRAS 349 ...yrveeesgslvlgWkdrpLvsvSaWr 374
                         y v e  g+l+l  +++p++ vSaWr
  OMERI05G12880.1 528 errYGVTEGGGWLILNREEKPMFCVSAWR 556
                      556*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.317129530IPR005202Transcription factor GRAS
PfamPF035142.0E-68158556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVAQAATAAA TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AGDNGGHGSS  60
SASQNASGSG EGQGGSMSLS LQLRPLGSMP TAAVAVSVPP MAAAPMMAGP AAAPAPAPAP  120
PLATMAVAQN ASLAAVASAL AAHRRNQATH RSAALHGHLR RCAEALAASR PADADAELAS  180
IARMASADGD AVQRVAAAFA EAIARVVIRP WRGVSAALFP SDVAGGDALG AWEAEFARQS  240
FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLHGLA TRRAAVRPCL  300
RLTIVHEHKH FLAQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST  360
LQLHRLVGAG ILSTAAPPSP AAAAGGMASP LPPANMSSKV DRLLRGFHLL SPRAIILTEN  420
EANHFVPSFT DRFASALPYY EQLFASMEEA GAAAVERKAA ERYLLKEEIK DVIACDQDGP  480
RWARHETLGR WVVRMGAAGF ALAPAITVVT AAGRVRAVAA RLPGGGEERR YGVTEGGGWL  540
ILNREEKPMF CVSAWRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-241525561375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLA0A0E0DQV40.0A0A0E0DQV4_9ORYZ; Uncharacterized protein
STRINGOMERI05G12150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-23GRAS family protein