PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G13370.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 409aa    MW: 44675.2 Da    PI: 7.5324
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G13370.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.3e-1392148155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  OMERI05G13370.2  92 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 148
                      57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-892148IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1492158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-1293157IPR001471AP2/ERF domain
SMARTSM003802.2E-1893162IPR001471AP2/ERF domain
PROSITE profilePS5103218.22893156IPR001471AP2/ERF domain
PRINTSPR003674.2E-594105IPR001471AP2/ERF domain
PRINTSPR003674.2E-5138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASPGPAAGM QQKLEAAAAA AGGGDGAEWG RGMQKMEAVG AGGEGVGVGV GAGAEQAAPP  60
PRRPVAARKE RVCTAKERIS RMPPCAAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ  120
NKKGKQGAYD DEEAAARAYD LAALKYWGAG TQINFPVSDY ARDLEEMQMI SKEDYLVSLR  180
RQLHNSRWDA SLGHLLGNDY MSLGKDITLD GKFAGTFGLE RKIDLTNYIR WWLPKKTRQS  240
DTSKMEEVTD EICAIESSMQ RTEPYKFPSL GLHSNSKPSS VVLSACDILS QSDAFKSFSE  300
KSTKLSEECT FSKEMDEGKT VTPVTATGHD TTAVNMNVNG LLVQRAPYTL PSVTAQMKNT  360
WNPADPSADP LFWTNFILPA SQPVTMATIA TTTFAKNEVS SSDPFHGQE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankAK0593240.0AK059324.1 Oryza sativa Japonica Group cDNA clone:001-025-H11, full insert sequence.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-91AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0E0DR240.0A0A0E0DR24_9ORYZ; Uncharacterized protein
STRINGOMERI05G12630.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-85AP2 family protein