PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G16460.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 605aa    MW: 64790.4 Da    PI: 8.7054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G16460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.11.9e-103834201954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  OMERI05G16460.1 383 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 420
                      554459******************************88 PP
2BELL74.12.2e-242643191772
             BELL  17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      ++V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  OMERI05G16460.1 264 QKVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 319
                      89**************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-23153317IPR006563POX domain
PfamPF075267.8E-34158315IPR006563POX domain
PROSITE profilePS5007112.455361424IPR001356Homeobox domain
SMARTSM003891.4E-11364428IPR001356Homeobox domain
CDDcd000864.86E-14364425No hitNo description
SuperFamilySSF466894.71E-17366431IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-29367428IPR009057Homeodomain-like
PfamPF059205.4E-19381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSSAAGGGGG GYGGGGGEHQ QQQHHQHLLL GQAAGQLYHV PQHSRREKLR FPPDHPAESP  60
PPPPPGSWPL PPAFYSYASS SSSYSPHSPT LAHAQLVAHG MPPGAATSGG AQIPSQNFAL  120
SLSSASSNPP PTPRRQFGGG GGGGAAGPYG PFTGYASVLG RSRFLGPAQK LLEEICDVGG  180
RPAQLDRGSD EGLLDVDAMD AAGSVDHEMD GSDRAAAAAD VVTVSGAEQQ WRKTRLISLM  240
EDFKALLSSL LKLAGGDPQF IYNQKVCKRY RQYYQQLQAV VSSFETVAGL SNAAPFASMA  300
LRTMSKHFKY LKGIILNQLR NTGKGATKDG LGKEDTANFG LMGGGAGLLR GNNVNSFSQP  360
HNIWRPQRGL PERAVSVLRA WLFEHFLHPY PTDSDKQMLA KQTGLTRNQV SNWFINARVR  420
LWKPMVEEIH NLEMRQLQKN PSLDKNQLSM QHTQHSSDSS GKPCDPSNSL QGQSSSMTRN  480
HSVSASRHIE DGLSQMPHDI SGQVSFAYNG LAAHHSIAMA HHHQPDLIGT GGAANAGGVS  540
LTLGLHQNNN RPYIAEPLPA ALPLNLAHRF GLEDVSDAYV MSSFGGQDRH FTKEIGGHLL  600
HDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17370427158Homeobox protein Meis1
4xrs_B2e-17370427158Homeobox protein Meis1
5bng_A2e-17370428159Homeobox protein Meis2
5bng_B2e-17370428159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0E0DSC30.0A0A0E0DSC3_9ORYZ; Uncharacterized protein
STRINGOMERI05G15570.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-61BEL1-like homeodomain 8