PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G16850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 175aa    MW: 18061.1 Da    PI: 8.3722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G16850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000843453120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++C+ C+k+F++   L  H 
  OMERI05G16850.1 34 FRCKTCSKTFTSFQALGGHR 53
                     89*********988886665 PP
2zf-C2H210.70.001691113123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  F+    L  H+r+H
  OMERI05G16850.1  91 HPCAVCGVEFRMGQALGGHMRRH 113
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-93356IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-63356No hitNo description
SMARTSM003550.413456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1183461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-686113No hitNo description
PROSITE profilePS5015710.65891118IPR007087Zinc finger, C2H2
SMARTSM003551.491113IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-1091115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASGQRAAGE GSGGLRPTHV AGGGGGGSAR GEYFRCKTCS KTFTSFQALG GHRTGHTRMA  60
ARQRQEHGAA GAAVVGATNN QRRVVSAHQW HPCAVCGVEF RMGQALGGHM RRHRGEAATT  120
TPAAVAAAAS AGAVSSVEPP EMLDLNSPPP VEEAGEGDQE VERAEQEPRL LNLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172650.0AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638878.18e-93zinc finger protein ZAT7
TrEMBLA0A0E0DSI11e-121A0A0E0DSI1_9ORYZ; Uncharacterized protein
STRINGOMERI05G15950.11e-122(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1905489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-22C2H2 family protein