PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G16880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 216aa    MW: 22613.7 Da    PI: 10.9618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G16880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000424971123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F++   L  H  +H
  OMERI05G16880.1 49 FECRTCGRRFPTFQALGGHRASH 71
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-74771No hitNo description
PfamPF139122.7E-114873IPR007087Zinc finger, C2H2
PROSITE profilePS501579.914976IPR007087Zinc finger, C2H2
SMARTSM003550.194971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-7118145No hitNo description
PfamPF139127.3E-9122147IPR007087Zinc finger, C2H2
SMARTSM003551.3123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSKRQYGEMD GVVDTARVLM LLSRRRQQQQ HGDVGGGMRE GHARAARVFE CRTCGRRFPT  60
FQALGGHRAS HKRRPRHGAA RAPRPAGAGA VLRLVGASSS SSSTDEARAG GGGRRTRGAG  120
AAHGCPVCGL EFAVGQALGG HMRRHRAAAG DVVHGGAGAA APRVKIDDVV VGDECTGVVC  180
LDLNLTPSEN CDKCRHAQLG VAVNSVQRTI LLDCPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-126CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881071.11e-103zinc finger protein ZAT12
TrEMBLA0A0E0DSI41e-150A0A0E0DSI4_9ORYZ; Uncharacterized protein
STRINGOMERI05G15970.11e-151(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-20C2H2 family protein