PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G17590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 576aa    MW: 60075.8 Da    PI: 5.7429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G17590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32219276260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkve+s  d++v+ei+Y+g H h+k
  OMERI05G17590.1 219 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVEQSP-DGQVTEIVYKGAHSHPK 276
                      8****************************************.***************85 PP
2WRKY106.51.4e-33393451159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  OMERI05G17590.1 393 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASNDLRAVITTYEGKHNHD 451
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-28214277IPR003657WRKY domain
SuperFamilySSF1182901.7E-24216277IPR003657WRKY domain
SMARTSM007744.6E-35218276IPR003657WRKY domain
PROSITE profilePS5081123.112219277IPR003657WRKY domain
PfamPF031068.0E-25219275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37378453IPR003657WRKY domain
SuperFamilySSF1182901.7E-29385453IPR003657WRKY domain
PROSITE profilePS5081138.526388453IPR003657WRKY domain
SMARTSM007741.4E-38393452IPR003657WRKY domain
PfamPF031065.5E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MTAAPGSLPL VNSRPVALSL AASRSSFSSL LSGGAGSSLN LMTPPSSLPP SSPSSYFGGV  60
SSSGFLDSPI LLTPSLFPSP TTTGALFSWM TTTATATAAT APESQVQGGV KDEQQQYSDF  120
TFLPTASTAL ATTMAGATAT TSTSFVQDSM LMAPLRGDPY NGEQQQPWSY QEPTMDADTR  180
PAEFTSSAAA GDVAGNGGYN QMAAAAAAGF RQQSRRSSDD GYNWRKYGQK QMKGSENPRS  240
YYKCTFPGCP TKKKVEQSPD GQVTEIVYKG AHSHPKPPQN GRGRGGSGYA LHGGAASDAY  300
SSADALTGTP VATPENSSAS FGDDEANGVS SSLRVASSVG GGGGGEDLDD DEPDSKRWRK  360
DGGDGEGVSL VAGNRTVREP RVVVQTMSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  420
TAGCPVRKHV ERASNDLRAV ITTYEGKHNH DVPAARGSAA AAALYRATPP PQASNAGMMP  480
TTAQPSSYLQ GAGGYPVLPA GGYGAYGGAP TTTQPANGGG FAALSGRFDD DATGASYSYT  540
SQQQQQPNDA VYYASRAKDE PRDDGIMSFF EQPLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36219454878Probable WRKY transcription factor 4
2lex_A2e-36219454878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981840.0DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637836.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-143WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0E0DSV30.0A0A0E0DSV3_9ORYZ; Uncharacterized protein
STRINGOMERI05G16690.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-84WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]