PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 778aa    MW: 85349.7 Da    PI: 7.5227
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-21120228199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegDf 79 
                      f+k+l+p+dv++++ lvlp     eh         +++++     ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D+
  OMERI05G18130.1 120 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRDT 208
                      99***********9.9999774..5659999887666555..78999*********************************************** PP

                      EEEEE-SSSEE..EEEEE-S CS
               B3  80 vvFkldgrsefelvvkvfrk 99 
                      vvF+  g  ++el+v+v+r+
  OMERI05G18130.1 209 VVFMSRGGGDGELLVGVRRA 228
                      ****7777**********97 PP
2B377.71.2e-24486591199
                      EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+l+psd+ ++     +++v+pk+ a+eh ++ + + +l++++++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F++
  OMERI05G18130.1 486 FDKKLSPSDAAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTNLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMR 577
                      899******999988888899**********776.455.9********************99999999*************************4 PP

                      -SSSEE..EEEEE-S CS
               B3  85 dgrsefelvvkvfrk 99 
                       +r ++e++v+v+rk
  OMERI05G18130.1 578 -RRPGGEPLVGVRRK 591
                      .44**********98 PP
3Auxin_resp28.66.3e-11251327276
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                      + a++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  OMERI05G18130.1 251 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 327
                      66778889********************9875333344999***********998875.569******9999966555 PP
4Auxin_resp58.62.7e-20608684183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ +as++++F+v+Y+P+++t+eFvv++e+ve +   ++++G+R+++ ++ +d+++r++   +Gtv++v+        +S+Wr+L+
  OMERI05G18130.1 608 AWLDASSAQPFRVTYCPWQGTAEFVVHREEVEGSP--PLAPGTRVRLLMNPDDARRRSQppvYGTVRDVHS-------RSEWRMLE 684
                      67889*****************************9..*********************9888888888888.......899**995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-21113232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-15115228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.58E-12118227No hitNo description
PROSITE profilePS508638.515119229IPR003340B3 DNA binding domain
SMARTSM010190.0031120229IPR003340B3 DNA binding domain
PfamPF023629.4E-18120228IPR003340B3 DNA binding domain
PfamPF065072.0E-5255330IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.109.1E-19480592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-15481592IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-12485590No hitNo description
SMARTSM010192.9E-7486592IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715491592IPR003340B3 DNA binding domain
PfamPF023621.3E-14501591IPR003340B3 DNA binding domain
PfamPF065071.7E-7612683IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQWAEDPALL  60
LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF  120
EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR  180
YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMSRGGGDGE LLVGVRRAPR ARGGHHPRPG  240
VEDNKVVSEV WLAMQGVTPF EVTYYPREGT FEFVVSRDEY IGFSFSPFYP FVPGTTVHLR  300
MNPLQIAQSI SGTVRTFDHL RPWRMLEVDW DQAASPISYR IHRQVNSWQV LRQPQPAATT  360
SAVRIRDAIV ATPQVQIMAP PRPPPPTTTT GMVPVIDHDI WLACATPYSG RLPVVGSAVY  420
YFPQGHAEQC HTCTTCLIPD NRHRLRCTSD DSYAMISLFP GDCYVTHRPL PAARDPVGGQ  480
REFCFFDKKL SPSDAAANGG GSGALFVIPK PSAAEHVLPR IPDLRVTNLQ GGRWEFGHTW  540
SDADTDRRSS SHTLAAGWSA FVKAKRLCVG DTVIFMRRRP GGEPLVGVRR KPHGGMPVGI  600
PDKHVADAWL DASSAQPFRV TYCPWQGTAE FVVHREEVEG SPPLAPGTRV RLLMNPDDAR  660
RRSQPPVYGT VRDVHSRSEW RMLEVDWDRD SPLAPTMNRR VNSWQVQPVQ LALPPQGSDE  720
EAAAATTSTA HAGDATTSAP SLALQLQTMA SSSSSSAPII PSRGSAFRIV NPRDGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-261870749388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0DT160.0A0A0E0DT16_9ORYZ; Auxin response factor
STRINGOMERI05G17200.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-28auxin response factor 17