PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G18410.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 461aa MW: 52656.3 Da PI: 9.6145

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G18410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.2	3e-18	321	408	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k++++s+v++ +l lp +f++ h ++ +++lede+g +++ + +++ + l++GW++F+ ++L++gD++vF+l + ++f ++ OMERI05G18410.1 321 FVKTMVRSHVSSCFWLGLPTRFCKLHLP--SKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 406 89*******************88843..35679***********..555444..*********************9876777..55 PP EE CS B3 95 kv 96 ++ OMERI05G18410.1 407 HI 408 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14303	2.9E-8	96	183	IPR029466	No apical meristem-associated, C-terminal domain
Gene3D	G3DSA:2.40.330.10	2.8E-21	313	410	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-24	314	410	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-25	319	410	No hit	No description
PROSITE profile	PS50863	12.548	321	412	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-17	321	409	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-22	321	412	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MQISAWLYHS TDPIEGNARK GDTYWRQVAA TYNSTTEDGR KRDPKQLKGH WHKNTPKVSA 60 FNAIYILCRD NYESGRSEEM LMEQALEIYR ARKGHPFTLQ YWWKAVCDSP KWNAHVTLLG 120 HAPTKIAAEL DVNAPPVEEH EEQPRPMGIK KAKKLKKAGG FVSEQVKEFL KSMVDAKARS 180 VKESIFWAVQ GTFLESQCFS FLATWIGGRH IHDLGIKKMS KSLLEAARLQ KSTRASPKPR 240 KKFEVGATEV RRSSRARNSV SYKENFDELD SFLRRRRGSR IRNTEQGRDY TGRVASYEQQ 300 QRAFKKAERL QNSLDPENPS FVKTMVRSHV SSCFWLGLPT RFCKLHLPSK EYKMVLEDEE 360 GGEFDSVYIG NRTGLSGGWR GFAMHHNLED GDSLVFELAE PDRFKIHIVK AVDEDVNESE 420 PADEGADGDK DTSTEDAAEQ DDSPNAEPLK GAKRRKLRGR R

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MQISAWLYHS TDPIEGNARK GDTYWRQVAA TYNSTTEDGR KRDPKQLKGH WHKNTPKVSA  60
FNAIYILCRD NYESGRSEEM LMEQALEIYR ARKGHPFTLQ YWWKAVCDSP KWNAHVTLLG  120
HAPTKIAAEL DVNAPPVEEH EEQPRPMGIK KAKKLKKAGG FVSEQVKEFL KSMVDAKARS  180
VKESIFWAVQ GTFLESQCFS FLATWIGGRH IHDLGIKKMS KSLLEAARLQ KSTRASPKPR  240
KKFEVGATEV RRSSRARNSV SYKENFDELD SFLRRRRGSR IRNTEQGRDY TGRVASYEQQ  300
QRAFKKAERL QNSLDPENPS FVKTMVRSHV SSCFWLGLPT RFCKLHLPSK EYKMVLEDEE  360
GGEFDSVYIG NRTGLSGGWR GFAMHHNLED GDSLVFELAE PDRFKIHIVK AVDEDVNESE  420
PADEGADGDK DTSTEDAAEQ DDSPNAEPLK GAKRRKLRGR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	45	GRKRDPKQ
2	144	152	RPMGIKKAK
3	448	454	LKGAKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068705	0.0	AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639491.1	1e-174	B3 domain-containing protein Os05g0481400 isoform X2
Swissprot	Q5KQI4	1e-175	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A0E0DT43	0.0	A0A0E0DT43_9ORYZ; Uncharacterized protein
STRING	ONIVA02G25740.1	1e-174	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-39	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]