PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G19140.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 197aa    MW: 22134.1 Da    PI: 5.7239
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G19140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.12.5e-1512402755
          G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                     AtPk +l +m+v+g+t++hvkSHLQkYRl
  OMERI05G19140.1 12 ATPKGVLTVMGVPGITIYHVKSHLQKYRL 40
                     9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-61040IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-141141IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-101241IPR006447Myb domain, plants
PfamPF143791.4E-2472118IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MALQVDKVWT GATPKGVLTV MGVPGITIYH VKSHLQKYRL AKYIPESPAE GSKDEKKDSS  60
DSLSNTDSAP GMQINEALKM QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ MIIEEQQKLG  120
GSLKACEEQK LPRSPPSLDD YPDSMQPSPK KPKMDLSPDS VRDVTQSDFE SHLIGPWDQE  180
AAFRVDEFKA DPGLNKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.11e-131myb family transcription factor PHL7
RefseqXP_015639153.11e-131myb family transcription factor PHL7
RefseqXP_015639154.11e-131myb family transcription factor PHL7
RefseqXP_015639155.11e-131myb family transcription factor PHL7
SwissprotQ9SJW04e-55PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0DTE01e-142A0A0E0DTE0_9ORYZ; Uncharacterized protein
STRINGOMERI05G18250.11e-132(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-36G2-like family protein