PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G20390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 621aa    MW: 67413.3 Da    PI: 6.7602
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G20390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-2467168199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +   s++l+  d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +
  OMERI05G20390.1  67 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGD 157
                      99****************************864443.4569************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++v+r+
  OMERI05G20390.1 158 DGQLRLGVRRA 168
                      88899999986 PP
2Auxin_resp106.72.5e-35193273182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRfk+ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L
  OMERI05G20390.1 193 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFKVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 273
                      578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-4356205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-3962170IPR015300DNA-binding pseudobarrel domain
CDDcd100178.87E-2365167No hitNo description
PfamPF023621.0E-2167168IPR003340B3 DNA binding domain
PROSITE profilePS5086312.88767169IPR003340B3 DNA binding domain
SMARTSM010195.3E-2367169IPR003340B3 DNA binding domain
PfamPF065071.0E-27194273IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGIDLNTVEE EAEEGAAVAD AATDEVYARL ALVAEGERNF REGGGGDGAG EMEGCDAEKK  60
PRMPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKT VRPSQELIAV DLHGTQWKFR  120
HIYRGQPRRH LLTTGWSSFV NRKKLVSGDA VLFLRGDDGQ LRLGVRRAVQ LRNEALFEPV  180
NSSDSKLRIL SSVASSLENK SVFHICFNPR SGASEFIVPY WRLLKSLNHP FSIGMRFKVC  240
YESEDANERS AGLISGISEV DPIRWPGSRW KCLLVRWDDS TDSSHQNRVS PWEIERVGGS  300
VSVTHSLSSG SKRTKLHFPQ GSLDTPFLNG NGHPDSMGTE NFHRVLQGQE FRGSRSHGVV  360
CSESPGVPNF QSPDNRRFSA DMRGYMMPAS GPPQRNTQFT YQPVGFSESL GFPEVLQGQE  420
MSQVVPLFRG ATFGARTQND RVVSANSVHR SAAQSGLLAS TQGHPITQFT LSSSKVSSPS  480
SVLMFNQATA PNHETIGGTN NKGMHGSQFA SQEMISETVT WPGTQCQMPS EITSNQFALA  540
RIPAPPSGAE SGSPKRDVGR SSCRLFGFSL TGNMLGEDGE GLEDGAIEAG CENPPVLELF  600
GHSHSTPGAL HALCAAAPLG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-771929584353Auxin response factor 1
4ldy_B4e-771929584353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679270.0AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637659.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0E0DTV60.0A0A0E0DTV6_9ORYZ; Auxin response factor
STRINGOBART05G22670.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-119ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]