PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G23070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 255aa    MW: 27958 Da    PI: 8.623
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G23070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.83.1e-294192358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +vrY+eC++NhAa++Ggh+vDGCgEfmp       a+alkCaACgCHR+FHR++  
  OMERI05G23070.1 41 EVRYHECMRNHAAAMGGHVVDGCGEFMPG----DAADALKCAACGCHRSFHRKDDG 92
                     79**************************8....3479****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.4E-254290IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-194290IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-244390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1344490IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.35E-20159229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30160230IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-26171227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFRGHDEPV DEMGVAYGRT PPSSSSSPAA SSAGNGAGAA EVRYHECMRN HAAAMGGHVV  60
DGCGEFMPGD AADALKCAAC GCHRSFHRKD DGQQQQQLRL LVPSPPTPRV PLLMPPPHPH  120
PHPHPQHQHP YLHPPFPYHH TPSGSGGTTT ESSSEERGPP SSSAAAAQGR RKRFRTKFTP  180
EQKEQMLAFA ERVGWRIQKQ DEALVEQFCA QVGVRRQVFK VWMHNNKSSI GSSSGGGSRR  240
QPQEQQSQQQ QQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-281722351880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639557.11e-115zinc-finger homeodomain protein 6
SwissprotB8AX531e-119ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0E0DUU50.0A0A0E0DUU5_9ORYZ; Uncharacterized protein
STRINGOMERI05G22380.11e-128(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-28homeobox protein 22