PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G23580.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 207aa MW: 23117 Da PI: 8.2632

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G23580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	35.6	1.8e-11	6	44	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++YC Cf ++ +Cs +C+C++C+N + OMERI05G23580.1 6 ERPKCSCVQSSCTQLYCPCFRSRYFCSGNCNCTGCHNIK 44 5679*********************************75 PP
2	TCR	44	4.4e-14	105	143	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ k+C+C+kskC k+YCeCf++ + C+ +CkC++C+N+ OMERI05G23580.1 105 KHAKECSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNS 143 5889**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	6.2E-6	5	46	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	30.061	6	145	IPR005172	CRC domain
Pfam	PF03638	3.8E-9	9	42	IPR005172	CRC domain
SMART	SM01114	2.1E-10	105	146	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.8E-11	108	143	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MANNQERPKC SCVQSSCTQL YCPCFRSRYF CSGNCNCTGC HNIKYYEDAI EEISDMIQMK 60 NPNAFDPKII VSVQDATAAD PQSSTSAISD PKNTSDAMPG NEQRKHAKEC SCRKSKCSKL 120 YCECFKNSVG CTAKCKCQEC SNSFGVKKSE SSNKPDDKNA TDGLTHEETR HMKNQLRKTS 180 RYLGKPGTLI QTNAQDIFDK LTTTFRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC098598	1e-116	AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence.
GenBank	AP014961	1e-116	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-116	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640260.1	1e-111	protein tesmin/TSO1-like CXC 2 isoform X2
Refseq	XP_025881429.1	1e-111	protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	A0A0E0DV20	1e-151	A0A0E0DV20_9ORYZ; Uncharacterized protein
STRING	OGLUM05G29120.1	1e-111	(Oryza glumipatula)
STRING	ONIVA10G19520.1	1e-111	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12267	23	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	4e-19	Tesmin/TSO1-like CXC domain-containing protein