PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G23670.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 267aa MW: 28232.3 Da PI: 8.8243

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G23670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	1.9e-13	117	161	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+ OMERI05G23670.1 117 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 161 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.439	110	166	IPR017930	Myb domain
SuperFamily	SSF46689	2.39E-16	111	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-17	113	164	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.6E-10	114	157	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-10	114	164	IPR001005	SANT/Myb domain
CDD	cd00167	4.84E-9	117	162	No hit	No description
Pfam	PF00249	2.1E-10	117	160	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MHAIMARRCS GDYSTAGQRA GEEGGGGGLR LFGVQLHAAA ASSPASYLHK SYSMDCLRLQ 60 VSSPSSLPSS SSSPSPLTSS LLLSIDEGCE RPAADGYLSD GPHGAAATMR ERKKGVPWSE 120 QEHRLFLAGL EKLGKGDWRG ISRSFVTTRT PTQVASHAQK FFLRHNSAAK KTNNKRRSSL 180 FDMVQDCDSG GRSLASSDPA TRCNNNISAS LSLQVSHHKS AGSAWPSSET PSVSEAQQGH 240 GYGTSHHCSP LDLELGMSLS TTPSIGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059813	0.0	AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence.
GenBank	AK068595	0.0	AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638259.1	1e-159	transcription factor MYBS3-like
Swissprot	Q7XC57	6e-37	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0E0DV41	0.0	A0A0E0DV41_9ORYZ; Uncharacterized protein
STRING	OMERI05G23010.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-38	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]