PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00310.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 163aa    MW: 18010.4 Da    PI: 10.0448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00310.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08115149137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      r +WT  E++++++a +++  + Wk+I +++g  +t 
  OMERI06G00310.3 115 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 149
                      789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.16E-10103151IPR009057Homeodomain-like
PROSITE profilePS512939.717113163IPR017884SANT domain
TIGRFAMsTIGR015571.7E-9113150IPR006447Myb domain, plants
SMARTSM007179.9E-4114163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4114150IPR009057Homeodomain-like
PfamPF002493.1E-6115149IPR001005SANT/Myb domain
CDDcd001671.95E-5117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEVRRKGVWG PSVSVSGGTR GQEKNPRCDV FLLTPRSAPF SSSSSSSPPA NHLTKQAVEL  60
STPTQPNPRL RLCEIAGMSS PPQQLLDSSS PGPGPGVEDD GGRRVRKPYT ITKSRESWTD  120
PEHDKFLEAL QLFDRDWKKI EAYVGSKTVI QPLKLSYHNK LLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011291e-164AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149621e-164AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DVJ61e-115A0A0E0DVJ6_9ORYZ; Uncharacterized protein
STRINGOMERI06G00320.11e-106(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-25MYB_related family protein