PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00310.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 348aa    MW: 38340.5 Da    PI: 6.1271
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00310.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08115153141
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                      r +WT  E++++++a +++  + Wk+I +++g  +t  q++
  OMERI06G00310.4 115 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQLV 153
                      789*****************77.*********.99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-10103155IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-9113151IPR006447Myb domain, plants
PROSITE profilePS5129310.009113164IPR017884SANT domain
SMARTSM007179.8E-7114162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-4114151IPR009057Homeodomain-like
PfamPF002495.0E-6115151IPR001005SANT/Myb domain
CDDcd001674.97E-5117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEVRRKGVWG PSVSVSGGTR GQEKNPRCDV FLLTPRSAPF SSSSSSSPPA NHLTKQAVEL  60
STPTQPNPRL RLCEIAGMSS PPQQLLDSSS PGPGPGVEDD GGRRVRKPYT ITKSRESWTD  120
PEHDKFLEAL QLFDRDWKKI EAYVGSKTVI QLVAFVTEYV TLLQFLNLAG IDLIINLGVL  180
AAPQVVLPQQ ASHLMEQGCL IPMDISPVAR NFNANDVFSS WDSAIAQSFS PRHTHESQSG  240
TCPTSEAIEQ EIMLPTLRAM PDFAQVYNFL GSIFDPETSG HLQRLREMDP IDVETVLLLM  300
KNLSINLTNP NFEAHRKVFA SHGSGMDQVK HESLGDLGST HTLHLPFM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116721e-175AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence.
GenBankAK1196401e-175AK119640.1 Oryza sativa Japonica Group cDNA clone:002-130-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642931.11e-158protein REVEILLE 6
TrEMBLA0A0E0DVJ50.0A0A0E0DVJ5_9ORYZ; Uncharacterized protein
STRINGOMERI06G00320.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-58MYB_related family protein