PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 196aa    MW: 21292.3 Da    PI: 9.492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.61.5e-2530134197
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g      +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F 
  OMERI06G00450.1  30 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDAHGggggdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFC 123
                      99***************************999445557789****************************************************9 PP

                      E-SSSEE..EEEEE CS
               B3  84 ldgrsefelvvkvf 97 
                         r +++l++  +
  OMERI06G00450.1 124 ---RAGARLFIDCR 134
                      ...44555666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-3424138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2626129IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-1928122No hitNo description
SMARTSM010192.5E-1630137IPR003340B3 DNA binding domain
PfamPF023621.2E-2230135IPR003340B3 DNA binding domain
PROSITE profilePS5086311.75830137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MATIVAWESR NQLQGGGGSH GGGERREHMF EKVVTPSDVG KLNRLVVPKH YAEKYFPLGP  60
AARTSPAGTV LCFEDAHGGG GGDSTWRFRY SYWSSSQSYV ITKGWSRYVR DKRLAAGDTV  120
SFCRAGARLF IDCRKRAAAV SSLVPPAAAA LIKVQLPPSR PVVDEEEASC GRRCLRLFGV  180
DLQLLADAPP ALDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-43261364113B3 domain-containing transcription factor NGA1
5os9_B7e-43261364113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCT8299120.0CT829912.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128K13, full insert sequence.
GenBankKC0191730.0KC019173.1 Oryza rufipogon cultivar RBPH54 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.11e-102B3 domain-containing protein Os06g0107800
SwissprotQ5VS551e-103Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0E0DVL91e-141A0A0E0DVL9_9ORYZ; Uncharacterized protein
STRINGOMERI06G00470.11e-142(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-40related to ABI3/VP1 1