PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25694.5 Da    PI: 9.7253
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-271867251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  OMERI06G00470.1 18 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 67
                     8*********************************************9986 PP
2K-box38.74.4e-1491155973
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                        e + ++++ +++ L  ei++ +   R+++Ge+Les+sl+eL+ Le q+eksl++iR +K   +
  OMERI06G00470.1  91 PRELTVKNMKSQSETLGMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKW 155
                      5667789****************************************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.815969IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32968IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-241131IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-271289IPR002100Transcription factor, MADS-box
CDDcd002652.50E-341578No hitNo description
PfamPF003191.1E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-243146IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-244667IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1596191IPR002487Transcription factor, K-box
PROSITE profilePS5129710.48896201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAAAAAAGGQ QRRREMRRIE DTTRRQVTFS KRRKGLLKKA SELSVLCDAE VALLVFSPRG  60
RFFHFASAPS LEGTIDRYIS HTQEAPANKK PRELTVKNMK SQSETLGMEI DTVEAYTRKM  120
QGENLESCSL QELHGLEMQM EKSLSSIRLQ KASKWSQCAI YVVAVQKKLM DKISQLQQQK  180
ILSEENALLL DQGKVQHAPI GAPEREMNQN QHVQDIDVDT ELVIGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11133RRREMRRIEDTTRRQVTFSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410550.0AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642540.11e-135MADS-box transcription factor 50-like isoform X1
RefseqXP_015642541.11e-135MADS-box transcription factor 50-like isoform X1
TrEMBLA0A0E0DVM11e-167A0A0E0DVM1_9ORYZ; Uncharacterized protein
STRINGOMERI06G00490.11e-168(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174341010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-37AGAMOUS-like 20