PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G00700.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 174aa MW: 18741.5 Da PI: 5.2481

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G00700.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.5	9.2e-17	59	151	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvk 95 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v+ OMERI06G00700.2 59 IAKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAaGGLEFQVQ 148 34566667799*****6..6666778889***********..*****************************764466677777777 PP EE- CS B3 96 vfr 98 ++r OMERI06G00700.2 149 ILR 151 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-19	50	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-18	51	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.98E-15	53	151	No hit	No description
PROSITE profile	PS50863	12.957	55	153	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0022	55	153	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.7E-15	58	151	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009735	Biological Process	response to cytokinin
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MELDADPTKL KAKPMIKPKV EPCDDDDELP PPPAASGSGE DWEATTPLAA GNPFFTALIA 60 KSHLHPKFQM WIPPRFQHRL AEPEARTAAV LHSGGKSWAT SYCGHLKMKK LDAGWSEFAV 120 DNRLLVGDAC VFELVAMGAA GGLEFQVQIL RGGLPAEVVT SKGLTSDQPI LIVD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106920	0.0	AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643738.1	1e-109	B3 domain-containing protein Os06g0112300
Refseq	XP_015643739.1	1e-109	B3 domain-containing protein Os06g0112300
Refseq	XP_025882046.1	1e-109	B3 domain-containing protein Os06g0112300
Swissprot	Q9LHY9	1e-110	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A0E0DVQ7	1e-124	A0A0E0DVQ7_9ORYZ; Uncharacterized protein
STRING	ORUFI06G00790.1	1e-107	(Oryza rufipogon)
STRING	OS06T0112300-01	1e-109	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]