PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G02970.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 252aa    MW: 27485.1 Da    PI: 7.8197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G02970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-085491544
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     T+eEd ++  a++ +G++  + Ia+ +   Rt++ +k+++
  OMERI06G02970.1 54 TEEEDRIITAAHAIHGNK-RACIAKLLD-ARTDNAIKNHL 91
                     99****************.*********.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.08E-65494IPR009057Homeodomain-like
CDDcd001671.01E-55490No hitNo description
Gene3DG3DSA:1.10.10.604.5E-95490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGEGDAGQES YHAMSKSRPP DQYWMDGQDL CRKPAWKSAT RAKSPPIDFE AHETEEEDRI  60
ITAAHAIHGN KRACIAKLLD ARTDNAIKNH LEFYSEADVV RHHDDHPLIV AFTSALRAKE  120
ELAGDELHLS AVIVPAILAL GSGCARSSVI HVISTDARGR RRFGRWAISS ARLPVEWIPS  180
SERSPSLVSS TALSSSAFAF AAALHVLPPP LRPSLAVIAN GRTTIYEDAG RRRTLHLHHA  240
AAPSPHLTPS LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DWM90.0A0A0E0DWM9_9ORYZ; Uncharacterized protein
STRINGONIVA06G03340.11e-147(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2012144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-11myb domain protein 109