PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G03270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 379aa    MW: 41122.9 Da    PI: 6.7953
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G03270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-1480139155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  OMERI06G03270.1  80 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 139
                      789******************888855566447**********99*************98 PP
2AP243.95.8e-14170216655
              AP2   6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +r+++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OMERI06G03270.1 170 IRRHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 216
                      89***********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1580148IPR016177DNA-binding domain
PfamPF008471.2E-1180139IPR001471AP2/ERF domain
SMARTSM003802.7E-2381153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1481148IPR001471AP2/ERF domain
PROSITE profilePS5103219.17781147IPR001471AP2/ERF domain
PRINTSPR003672.7E-58293IPR001471AP2/ERF domain
PROSITE profilePS5103217.135157224IPR001471AP2/ERF domain
SMARTSM003803.6E-22169230IPR001471AP2/ERF domain
PfamPF008471.1E-9170216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-15172225IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-15172226IPR016177DNA-binding domain
CDDcd000181.95E-20172226No hitNo description
PRINTSPR003672.7E-5206226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
METYGLVKDE LLHGIGRGQG RLYCEVKPTA APAVITAAGG GAKSVKRRKR EPSAAAMSAV  60
TAAGNGKEAG GSNAANKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY  120
NEEDAAARAY DLAALKYWGP TTYTNFPVAD YEKELKLMQG VSKEEYLASI RRHHHNGRWE  180
ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSTYIR WLKPPSSSAA  240
GTPHHHGGGM VVGADRVLAP AQSYPISAAA DDDVAGCWRP LPSPSSSTTT ALSLLLRSSM  300
FQELVARQPV VEGDDRQLAV VSGDDADADA DVKEPPPESE YGEVFASDEA AAAAAYGCSM  360
YELDDSFALI DDSVWNCLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248KSVKRRK
2105113PTQKKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034870.0AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0DWS40.0A0A0E0DWS4_9ORYZ; Uncharacterized protein
STRINGONIVA06G03970.10.0(Oryza nivara)
STRINGORGLA06G0029800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-68AP2 family protein