PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G03330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 603aa    MW: 63537.8 Da    PI: 6.9437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G03330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30255314159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  OMERI06G03330.1 255 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 314
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-32240314IPR003657WRKY domain
SuperFamilySSF1182903.01E-27248315IPR003657WRKY domain
PROSITE profilePS5081128.311250316IPR003657WRKY domain
SMARTSM007743.4E-37255315IPR003657WRKY domain
PfamPF031062.8E-27256314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MKEDMIKADS KQLASMYMKE EMIEGERQLG THEDRLKDEV IKDGDKISDG NFFKSLQNIS  60
STKEEGQDDK LESTRAEMGE VREENERLKT LLSRISHDYR SLQTHFYDVL QQGRAKKLPD  120
SPATDIEEPE FVSLRLGTST SKCKKEEKST TSSEVKGSTE DFLKIKGGLS LGLSDCRVDS  180
NNSEKVQPDV MTLSPEGSFE DARDDTAETT EQWPPSKMLK NLRSVGVEAE DDIAPQPQVK  240
KARVSVRARC DAPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAAGCPVR KQVQRCADDM  300
SILITTYEGT HNHPLSVSAT AMASTTSAAA SMLISGSSST SLAAYPAASP ALAFDASSKP  360
PVIGGRPFLL PTAAAAAITS TPSYPTITLD LTSPAAAATA SHAAFSLSNR FSHTRYPSTG  420
FTFSGSGPSS APWPGYLSYG ASLSAHPYNA GGGKSSSSFE AALSSINGSR QQGSGGGGGG  480
SAPLYQMQQK AAAAAAPPPS VITDTIAKAI TADPSFHTAL AAAITSYVGK KGSPPASGGE  540
DSKVGLKWGE HLGLGLTHSS PSTATAAAAA SSSIQMFLQP SLGLSGSTTS ASTSPVTNRE  600
QAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-202553151776Probable WRKY transcription factor 4
2lex_A5e-202553151776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643469.10.0probable WRKY transcription factor 72 isoform X2
TrEMBLA0A0E0DWS80.0A0A0E0DWS8_9ORYZ; Uncharacterized protein
STRINGOMERI06G03240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-62WRKY DNA-binding protein 72