PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G03620.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 824aa MW: 90722 Da PI: 6.71

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G03620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.4e-29	538	588	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OMERI06G03620.1 538 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 588 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	527	608	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-26	540	588	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-20	716	812	No hit	No description
SMART	SM00666	8.0E-18	726	809	IPR000270	PB1 domain
PROSITE profile	PS51745	18.398	726	809	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.5E-24	726	807	No hit	No description
CDD	cd06407	5.19E-43	727	807	No hit	No description
Pfam	PF00564	3.9E-15	727	807	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MVGDSEGNLT CMEEGDPQPS ISLARTPSEG AAAAVDLDLL EQLLSADNAW LVVAANTSRS 60 PNFFATPSNC LTDASVATTT PANSWWIQPS GASTSIRERF DQALSYIRET QSDAGVLVQL 120 WVPVKGNDGQ LVLTTSGQPF TLDQRSNSLI QFREVSTKYQ FSADVASGSS PGLPGRVFIG 180 RLPEWSPDVR YFTSYEYPRI SHAQYLDVHG TMGLPVFERG NYSCLGVIEL IMTKQKLNFT 240 SELNTICSAL QAVNLTSTEV SSIPRTKLNS ASYKDALPEI LEVLRAACIT HKLPLAQTWV 300 TCAQQGKRGS RHSDENYKYC ISTIDAACYV NEPQMQSFHE ACSEHHLLRG QGVAGKAFTT 360 NQPCFLPDIG SSTKLEYPLS HHAKIFNLKG AVAIRLRCTR TGIADFVLEF FLPTDCEVLE 420 EQKAVLDSLS GTMRSVCQTL RVVTDKEMED EAMREMNELN SFSPRGKNKV EELSFGDNTR 480 EDREETSWTT LVGTSQKRSD LAELHTHGML SHGGQGSSQA GDQTSKEGSK VKRRTKTEKT 540 VSLQVLRQYF AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVDH SLRKLQQIID 600 SVHGAETAFQ LNTLYKDLTN TSVSSDNNLS GSVTVPLANQ NNLDFEKHQH HRLSSNIPST 660 SLSHSSCSQS SDSSPSCSGG ATKHSPQVGA DQEAPIDLLQ DVAEKANGEQ QMSQSPSSPK 720 QTANVGMRVK VTFGSEKVRF RLKPECDFQE LKQEISKRLS IVDMNSLIVK YLDDDSEWVL 780 MTCDADLHEC FHVYKLADIQ TIKISVHLAA SPTTRITIGH TGFS

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MVGDSEGNLT CMEEGDPQPS ISLARTPSEG AAAAVDLDLL EQLLSADNAW LVVAANTSRS  60
PNFFATPSNC LTDASVATTT PANSWWIQPS GASTSIRERF DQALSYIRET QSDAGVLVQL  120
WVPVKGNDGQ LVLTTSGQPF TLDQRSNSLI QFREVSTKYQ FSADVASGSS PGLPGRVFIG  180
RLPEWSPDVR YFTSYEYPRI SHAQYLDVHG TMGLPVFERG NYSCLGVIEL IMTKQKLNFT  240
SELNTICSAL QAVNLTSTEV SSIPRTKLNS ASYKDALPEI LEVLRAACIT HKLPLAQTWV  300
TCAQQGKRGS RHSDENYKYC ISTIDAACYV NEPQMQSFHE ACSEHHLLRG QGVAGKAFTT  360
NQPCFLPDIG SSTKLEYPLS HHAKIFNLKG AVAIRLRCTR TGIADFVLEF FLPTDCEVLE  420
EQKAVLDSLS GTMRSVCQTL RVVTDKEMED EAMREMNELN SFSPRGKNKV EELSFGDNTR  480
EDREETSWTT LVGTSQKRSD LAELHTHGML SHGGQGSSQA GDQTSKEGSK VKRRTKTEKT  540
VSLQVLRQYF AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVDH SLRKLQQIID  600
SVHGAETAFQ LNTLYKDLTN TSVSSDNNLS GSVTVPLANQ NNLDFEKHQH HRLSSNIPST  660
SLSHSSCSQS SDSSPSCSGG ATKHSPQVGA DQEAPIDLLQ DVAEKANGEQ QMSQSPSSPK  720
QTANVGMRVK VTFGSEKVRF RLKPECDFQE LKQEISKRLS IVDMNSLIVK YLDDDSEWVL  780
MTCDADLHEC FHVYKLADIQ TIKISVHLAA SPTTRITIGH TGFS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005679	0.0	AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612115.1	0.0	protein NLP1-like isoform X1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0E0DWX0	0.0	A0A0E0DWX0_9ORYZ; Uncharacterized protein
STRING	OGLUM09G19240.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]