PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G03620.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 870aa MW: 95661.7 Da PI: 6.7778

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G03620.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.7e-29	584	634	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OMERI06G03620.2 584 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 634 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	573	654	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-25	586	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.41E-20	762	858	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.8E-24	772	853	No hit	No description
PROSITE profile	PS51745	18.398	772	855	IPR000270	PB1 domain
SMART	SM00666	8.0E-18	772	855	IPR000270	PB1 domain
Pfam	PF00564	4.1E-15	773	853	IPR000270	PB1 domain
CDD	cd06407	4.59E-43	773	853	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRA LLLDSEQERN SEGNLTCMEE 60 GDPQPSISLA RTPSEGAAAA VDLDLLEQLL SADNAWLVVA ANTSRSPNFF ATPSNCLTDA 120 SVATTTPANS WWIQPSGAST SIRERFDQAL SYIRETQSDA GVLVQLWVPV KGNDGQLVLT 180 TSGQPFTLDQ RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS 240 YEYPRISHAQ YLDVHGTMGL PVFERGNYSC LGVIELIMTK QKLNFTSELN TICSALQAVN 300 LTSTEVSSIP RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD 360 ENYKYCISTI DAACYVNEPQ MQSFHEACSE HHLLRGQGVA GKAFTTNQPC FLPDIGSSTK 420 LEYPLSHHAK IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR 480 SVCQTLRVVT DKEMEDEAMR EMNELNSFSP RGKNKVEELS FGDNTREDRE ETSWTTLVGT 540 SQKRSDLAEL HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL 600 KDAAKSLGVC PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL 660 YKDLTNTSVS SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS 720 PSCSGGATKH SPQVGADQEA PIDLLQDVAE KANGEQQMSQ SPSSPKQTAN VGMRVKVTFG 780 SEKVRFRLKP ECDFQELKQE ISKRLSIVDM NSLIVKYLDD DSEWVLMTCD ADLHECFHVY 840 KLADIQTIKI SVHLAASPTT RITIGHTGFS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRA LLLDSEQERN SEGNLTCMEE  60
GDPQPSISLA RTPSEGAAAA VDLDLLEQLL SADNAWLVVA ANTSRSPNFF ATPSNCLTDA  120
SVATTTPANS WWIQPSGAST SIRERFDQAL SYIRETQSDA GVLVQLWVPV KGNDGQLVLT  180
TSGQPFTLDQ RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS  240
YEYPRISHAQ YLDVHGTMGL PVFERGNYSC LGVIELIMTK QKLNFTSELN TICSALQAVN  300
LTSTEVSSIP RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD  360
ENYKYCISTI DAACYVNEPQ MQSFHEACSE HHLLRGQGVA GKAFTTNQPC FLPDIGSSTK  420
LEYPLSHHAK IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR  480
SVCQTLRVVT DKEMEDEAMR EMNELNSFSP RGKNKVEELS FGDNTREDRE ETSWTTLVGT  540
SQKRSDLAEL HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL  600
KDAAKSLGVC PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL  660
YKDLTNTSVS SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS  720
PSCSGGATKH SPQVGADQEA PIDLLQDVAE KANGEQQMSQ SPSSPKQTAN VGMRVKVTFG  780
SEKVRFRLKP ECDFQELKQE ISKRLSIVDM NSLIVKYLDD DSEWVLMTCD ADLHECFHVY  840
KLADIQTIKI SVHLAASPTT RITIGHTGFS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005679	0.0	AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612115.1	0.0	protein NLP1-like isoform X1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0E0DWX1	0.0	A0A0E0DWX1_9ORYZ; Uncharacterized protein
STRING	OGLUM09G19240.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]