PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G05540.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 454aa    MW: 50380.4 Da    PI: 6.9316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G05540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06164187123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L+rH r  H
  OMERI06G05540.1 164 YSCAVCGRRFPTRPDLTRHFRQlH 187
                      99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-5162190No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4163190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.256164192IPR007087Zinc finger, C2H2
SMARTSM003552.9E-4164187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166187IPR007087Zinc finger, C2H2
CDDcd061672.33E-10192314No hitNo description
Gene3DG3DSA:3.40.50.10101.8E-4229303IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPPPLSFLHL AANPTPLHAS PLRRARNPRL LLRHRLSLRT DHPSRHAAAA SAAAAAAGES  60
PSTPGGPIAD VEMVRGKDGV WTARPPTVVV LWDLDNKPPR GPPFPAATAL RDAASLLGRV  120
VSVSAFANRH AFSHVPAWVA DERRERRAMD RAERAGAASP PVPYSCAVCG RRFPTRPDLT  180
RHFRQLHQRE RNKKLARLRS LKGKKRQKFR ERFISGNTKY DDAARELLTP KVGYGLAAEL  240
RRAGVHVRTV SDKPQAADHA LKRQVKHSVA CGVDWLVLVS DDSDFTDTVR KARAADLRTV  300
VVGDGCRALG SVADIWLPWD RVENGEVDEE MLRSGTHMGF RDEEEDEQDD DEFIVDWDTS  360
DLDGVVDDIV ATRTKLFGAT TTISAFADEE IMDDILGVGV NGGDMLWSSD DEDEDDRQDL  420
WYTATQQTKR HHRIDTNTAE RERPSSNMQA ANSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8337170.0CT833717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN087K01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLA0A0E0DXM30.0A0A0E0DXM3_9ORYZ; Uncharacterized protein
STRINGOMERI06G05340.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-104C2H2-like zinc finger protein