PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G07250.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 187aa    MW: 20096.8 Da    PI: 4.2495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G07250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.1e-145441153
              AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                     ++g+Wv+eIr p++   r+r++lg+++t+e+Aa+a +aa  +l
  OMERI06G07250.1  5 QWGKWVVEIRLPNN---RRRIWLGSYDTPEKAARASDAAFICL 44
                     49*********943...6********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.331156IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-14356IPR016177DNA-binding domain
CDDcd000183.03E-20557No hitNo description
SMARTSM003804.7E-16562IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-19557IPR001471AP2/ERF domain
PfamPF008477.1E-8644IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MWLCQWGKWV VEIRLPNNRR RIWLGSYDTP EKAARASDAA FICLCGVQAI AGLNFPEYPP  60
PPPPPPPPPP PAIPYTDDLR EVYAFAVSHA NRPSTEVLAA IVVPAQVAAA DSNPDDAVRG  120
NVTPPPVQVA AGILDWSQFM ANPPLMYSPT ATAGSQAMWL VTAPATESEG EDDELATTSS  180
ISQCKTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060567e-83AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149627e-83AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126147e-83CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.15e-37ethylene-responsive transcription factor ERF018-like
TrEMBLA0A0E0DYA61e-132A0A0E0DYA6_9ORYZ; Uncharacterized protein
STRINGONIVA06G07230.11e-82(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-20ERF family protein