PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G07260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 371aa    MW: 40202.4 Da    PI: 5.505
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G07260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-151564255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGV+ +  + +WvAeI+ p++   rkr++lg+++++e+Aa+a +aa  +l+g
  OMERI06G07260.1 15 RYKGVWLRQ-WEKWVAEIQLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 64
                     59***8887.**********933...5*********************999998 PP
2AP255.31.6e-17240289255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr +  +g+W+AeIr ps+   rkr++lg+++t+e+Aa+a +aa  +l+g
  OMERI06G07260.1 240 KYKGVRLRQ-WGKWAAEIRLPSS---RKRIWLGSYDTPEKAARAFDAAFICLRG 289
                      8*****998.**********965...4*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.8231574IPR001471AP2/ERF domain
CDDcd000182.37E-211576No hitNo description
SuperFamilySSF541713.01E-171575IPR016177DNA-binding domain
SMARTSM003803.4E-251580IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-231576IPR001471AP2/ERF domain
PfamPF008472.0E-91564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-26239301IPR001471AP2/ERF domain
PROSITE profilePS5103222.379240299IPR001471AP2/ERF domain
SMARTSM003801.1E-31240305IPR001471AP2/ERF domain
CDDcd000182.03E-24240298No hitNo description
PfamPF008472.6E-10240289IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-19240300IPR016177DNA-binding domain
PRINTSPR003678.1E-9241252IPR001471AP2/ERF domain
PRINTSPR003678.1E-9263279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQANTTPPAP EKEMRYKGVW LRQWEKWVAE IQLPNSRKRI WLGSYDSPEK AARAFDAAFI  60
CLRGGEAIAG LNFPESPPAV VSRTTNPWKV LAFVMSHANR LSLLVAAIAQ EEEAQVEEKT  120
AEESSDVVRA NAAPPPPVQV AGGSFDWSQL PLYSPMITPA AEHWEEDNVE GDIPFCSEMS  180
VETSSNSRYI GAITSLLDRS LTTHSLEIMS SPMEPVSFMQ KSAAAADGGS AAQAAAERRK  240
YKGVRLRQWG KWAAEIRLPS SRKRIWLGSY DTPEKAARAF DAAFICLRGV QAIAGLNFPE  300
SPPPLPPATA HTGDLREVYA FSVSHANRPS AEAAPAAIVV PAQVATEESD GVVRGNAAPR  360
PVQVAAGSLD W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14235300973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642231.12e-47ethylene-responsive transcription factor ERF018
TrEMBLA0A0E0DYA70.0A0A0E0DYA7_9ORYZ; Uncharacterized protein
STRINGONIVA06G07230.11e-153(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-27ERF family protein