PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G07890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 257aa    MW: 26318.3 Da    PI: 7.197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G07890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-056284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F+++  L  H++ H
  OMERI06G07890.1 62 FECHYCRRNFPTSQALGGHQNAH 84
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-65990No hitNo description
PfamPF139124.6E-66186IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3236289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAAPHGMHAA VAAAPDATIR LFGRDVASND DDVVVVDGQL PKEEEEAGGG GAAAAAGETR  60
RFECHYCRRN FPTSQALGGH QNAHKRERQH ARRAHLEASL AAAHYLGPSA HLVYGGASLF  120
GYGHGHHAAA VSPQYGTVWA SSAVAPPGLY TTSTGMARSA AYGAGVDVSA LWRASSSSSP  180
PMMGSGGAFG TVAAGGRHGE AATAALVGCR ASKDENVVMS VVTSLPSLPS WQLPAPEKMG  240
RSELGQEAGV VSLELRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047540.0AP004754.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529B09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882184.11e-127zinc finger protein 8-like
TrEMBLA0A0E0DYM00.0A0A0E0DYM0_9ORYZ; Uncharacterized protein
STRINGOMERI06G07500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.16e-18zinc finger protein 8