PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G08900.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 228aa    MW: 25268.6 Da    PI: 6.8464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G08900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0690115326
                      S---SGGGGTS..--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartG..tCkyGdrCkFaHg 26 
                       e+C++f+      C++G+ C+FaHg
  OMERI06G08900.1  90 GEPCPDFRVAAraACPRGSGCPFAHG 115
                      5899999999999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.03787117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-491117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4122152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAYETSSDHQ LAAAAAAAEF LAALQVHLAG AEASSPTWGG RCAYDEDFMM YEFKVRRCPR  60
SRAHEWTSCP YAHPGEAARR RDPSRVTYTG EPCPDFRVAA RAACPRGSGC PFAHGTFETW  120
LHPSRYRTRP CRSGMLCARP VCFFAHNDKE LRIVGDDAPA ATPSPRSPFT TSEDSPPPSP  180
MDMKQIVLAM QQMDARKATR SVAPKTDMLR QELEEDAPEL GWVSDLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106610.0AK110661.1 Oryza sativa Japonica Group cDNA clone:002-169-F02, full insert sequence.
GenBankAP0029720.0AP002972.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0638D12.
GenBankAP0032180.0AP003218.6 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644032.11e-153zinc finger CCCH domain-containing protein 10
SwissprotQ94JI51e-154C3H10_ORYSJ; Zinc finger CCCH domain-containing protein 10
TrEMBLA0A0E0DZ071e-166A0A0E0DZ07_9ORYZ; Uncharacterized protein
STRINGORUFI01G33300.11e-152(Oryza rufipogon)
STRINGOS01T0738400-011e-152(Oryza sativa)
STRINGORGLA01G0405900.11e-152(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-45C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]