PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09050.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 389aa    MW: 40848.1 Da    PI: 6.5988
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.74.1e-17292361270
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsets 70 
                       +lLl+c e v++++l +aq++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ l +ps+++
  OMERI06G09050.1 292 LTLLLQCTESVNADNLDEAQHALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLpNPSPAA 361
                      579**********************************************************994444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.794265389IPR005202Transcription factor GRAS
PfamPF035141.4E-14292361IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSPATHSS YSSSSSHAIT STSSLLPPLP SDHHHHLLLY LDHQEQHHLA  60
AAMVRKRPAS DVDLPPPRRH VTGDLSDVTA AAAPSSASAQ LPALPTQLPA FHHTDMDLAA  120
PAPPPQQQVA AGEGGPPSTA WVDGIIRDII ASSGAAVSVA QLIHNVREII RPCNPDLASI  180
LELRLRFLLT SDPAPPPPSH PALLPPDATA PPPPPTSVAA LPPPPPQQPD KRRREPQCQD  240
QEPNQPQSPK PPTAEETAAA AAAAAAAAAA AAKERKEEQR RKQRDEEGLH LLTLLLQCTE  300
SVNADNLDEA QHALLEIAEL ATPFGTSTQR VAAYFAEAMS ARLVSSCLGL YAPLPNPSPA  360
AARLHGRVAA AFQVAAMPPS AARPQHACR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-272753743101Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620600.11e-161protein SCARECROW 2
SwissprotA2ZAX51e-167SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0E0DZ350.0A0A0E0DZ35_9ORYZ; Uncharacterized protein
STRINGORGLA12G0010300.11e-172(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.18e-22GRAS family protein