PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 385aa    MW: 40556.4 Da    PI: 6.5612
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18262296135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OMERI06G09270.1 262 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 296
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-7115345IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.104.4E-15256293IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.3E-18256306IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.453256292IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-15258319No hitNo description
CDDcd002021.56E-14261312No hitNo description
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15262296IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVTAEFGGA YYGGAAGREK KALQQGCGDH FAVDDLLVLP YDEEDETTRE GEATGGKEEA  60
AGFGNASADS STITALDSCS NSFGLADGDF PGELCEPYDQ LAELEWLSNY MNDGDDAFAT  120
EDLQKLHLIS GIPFGGFSTS SVPSAQAASA AASMAVQPGG FLPEAPVPAK ARSKRSRAAP  180
GNWSSRLLVL PPPPASPPSP ASMAISPAES GVSAHAFPIK KPSKPAKKKD APAPPAQAQL  240
SSVPVHSGGS APAAAAGEGR RCLHCETDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY  300
RPAASPTFMV SKHSNSHRKV LELRRQKEMH QQTPHHHQPQ VAAAGGVGSL MHMQSSMLFD  360
GVSPVVSGDD FLIHHHLRTD FRPLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218960.0AK121896.1 Oryza sativa Japonica Group cDNA clone:J033105E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631175.10.0GATA transcription factor 12
TrEMBLA0A0E0DZ740.0A0A0E0DZ74_9ORYZ; GATA transcription factor
STRINGOMERI06G08780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-50GATA transcription factor 12