PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G10800.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 304aa    MW: 34474.4 Da    PI: 7.0821
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G10800.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.76.4e-2682162171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OMERI06G10800.4  82 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 162
                      79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-2479163IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3382162IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-2183162IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-1384162IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYLLNFLLFR FGQEMALRAV SSVASPSLDE TSAANVSDDE DDDKLDDAEG DAESEKLSLS  60
QSIDNPSDKP DEPPCKLRSE HRKEKSLGLL TQNFVKLFLT MEIETISLDE AAKRLLGEGH  120
AANNMRTKVR RLYDIANVLS SLNLIEKTQQ ADSRKPAFRW LGQAKRNEGV TVALPPTKTL  180
PNKRAFGTDL TNIDNKRGKL DSTTENRGKP TQDGGNLFKN LQRQLGQENR SDFVYGPFHP  240
AGARKQEHGN RTVQEKERKS IQDWENLASS FRPQYQNPGL NDLFGHYMEA WRSWYSDLRR  300
DRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A8e-1582154152228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ43e-54E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0E0DZT80.0A0A0E0DZT8_9ORYZ; Uncharacterized protein
STRINGOMERI06G10180.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-56DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]