PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G11020.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 236aa MW: 26138.4 Da PI: 10.9563

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G11020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	8.9e-15	69	114	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l + ++G+++W+++a+ m+ +R++ qc++rw+++l OMERI06G11020.1 69 AWTPEEDAVLEGLAMEHGSRHWRRVAAQMPRRRSPAQCRDRWRDHL 114 7******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.591	62	118	IPR017930	Myb domain
SMART	SM00717	1.7E-10	66	116	IPR001005	SANT/Myb domain
CDD	cd00167	5.06E-11	69	114	No hit	No description
SuperFamily	SSF46689	1.92E-16	69	139	IPR009057	Homeodomain-like
Pfam	PF00249	6.7E-14	69	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-17	69	126	IPR009057	Homeodomain-like
SMART	SM00717	1.7	119	175	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.61	122	173	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.1E-5	127	172	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDMELSSSST VVASSPASPP LGRCVPPHQA PAGVDARGGR RPGGPRHGAR LPPLAPRGGA 60 DXRIRLPPAW TPEEDAVLEG LAMEHGSRHW RRVAAQMPRR RSPAQCRDRW RDHLARDVFH 120 RPFTACDDAE LAHLCLRHDD AGAAAGHRRW KDVSRAVYGR SSCAVKRRWR ELRRSDAFLG 180 ALWRPRTTAT APPPANARDH DDVLMNCGSM GARARVVAHL IDDLLFNWSL DVGCIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	6e-13	70	169	14	103	MYB21
3osf_D	6e-13	70	169	14	103	MYB21
3osg_A	6e-13	70	169	14	103	MYB21
3osg_D	6e-13	70	169	14	103	MYB21
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004651	0.0	AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBank	AP005107	0.0	AP005107.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0431E05.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629497.1	1e-76	transcription factor MYB44-like
TrEMBL	A0A0E0DZW1	1e-164	A0A0E0DZW1_9ORYZ; Uncharacterized protein
STRING	OMERI06G10370.1	1e-165	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	5e-14	myb domain protein 70