PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G12470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 460aa    MW: 49782.5 Da    PI: 6.2674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G12470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09276324355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OMERI06G12470.1 276 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 324
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.18E-10271328No hitNo description
SuperFamilySSF474598.24E-16271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15274329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6276324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTGREKEMNE KDATDLEERS EASEQSQALS FHGGAMFLQE AQIASPAAAS NALTAMANPF  60
PIPPGLWNPP SHNMGLGETS FSSLLVMLSA SAPPPFAAIP GFVDSAAGFP CYNGGNLGAM  120
INHPFPSIHQ PLGDFQNGVE PCREIEDIEI EGSKNLSQTG EKQQGDGETM HAVDSSSKEL  180
SMPGRNGGAG HDEGTRVSCS KKRKRSGQDG GVKHAEGGEQ LATVGSAQKN EDDEKGEPKR  240
SSVASGKSSG KQTKDNAGSP KEDYIHVRAR RGQATNSHSL AERVRREKIS ERMKYLQDLV  300
PGCSKVTGKA VMLDEIINYV QSLQRQVESC CDVIWYTQCV HVGQFLSMKL ASVNPTLDFN  360
IERILSKDIF QSRGTTASSA FGFFPDIVHP RLHPPKYTQV GMPSTVNPTD AFGRVIHAPL  420
GTNSAFKEPK HQMPNNLNGE FQDVIEMPFT HDHHGSNDQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0E0I20.0A0A0E0E0I2_9ORYZ; Uncharacterized protein
STRINGOMERI06G11730.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.39e-65bHLH family protein