PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G13650.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24494.2 Da    PI: 9.8673
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G13650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-271766251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  OMERI06G13650.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                     8***********************************************86 PP
2K-box17.41.8e-071592014385
            K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      +++L++ eL+ Le+++ ++l+ +++k +  + + ++++ kk k
  OMERI06G13650.1 159 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLSQSEKKGK 201
                      799********************99998888888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.235868IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-35867IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-281030IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-281086IPR002100Transcription factor, MADS-box
CDDcd002652.98E-321378No hitNo description
PfamPF003194.0E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283045IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-284566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSASS IDTIFGRYWD LLDTTIDLNI EARESRVDCN MQVYLIRASG RRRHPTWTLA  120
SLLCVEDWLY EALLRQKEHS DDPVPKINHI TQCVLESNVN ELNIAELRGL EEAMTNALTV  180
VKNKLMMKVA SVLSQSEKKG KSCWISEPRS RVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-171080371Myocyte-specific enhancer factor 2B
1tqe_Q5e-171080371Myocyte-specific enhancer factor 2B
1tqe_R5e-171080371Myocyte-specific enhancer factor 2B
1tqe_S5e-171080371Myocyte-specific enhancer factor 2B
6c9l_A5e-171080371Myocyte-specific enhancer factor 2B
6c9l_B5e-171080371Myocyte-specific enhancer factor 2B
6c9l_C5e-171080371Myocyte-specific enhancer factor 2B
6c9l_D5e-171080371Myocyte-specific enhancer factor 2B
6c9l_E5e-171080371Myocyte-specific enhancer factor 2B
6c9l_F5e-171080371Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRKRGKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429801e-161AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-108MADS-box transcription factor 51-like isoform X2
TrEMBLA0A0E0E0X41e-156A0A0E0E0X4_9ORYZ; Uncharacterized protein
STRINGOMERI06G12640.11e-157(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.18e-25AGAMOUS-like 14