PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G13840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 222aa    MW: 23636.9 Da    PI: 10.0891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G13840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.5e-31131451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWk.atgkdke 91 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  +    g+r++ +++ g Wk a g+dk+
  OMERI06G13840.1  13 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPASGGGrGRRQQVTASGGCWKpAGGRDKP 103
                      79****************************.8899998***********43..4567889999999887751555555677899**66678*** PP

              NAM  92 vlsk...kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      v+++   +++lvg+kk +vf   +g+a  +    Wvmhey+l
  OMERI06G13840.1 104 VVVArcgGSHLVGVKKGMVFVprQGKAAAAGGGCWVMHEYSL 145
                      99988988999**********98899999999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-419169IPR003441NAC domain
PROSITE profilePS5100541.83213169IPR003441NAC domain
PfamPF023651.7E-2014145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEPVVVRHGG VVLPPGFRFH PTDEELVVQY LRRKAFGLPL PAAVIPDLHN LFKLDPWDIP  60
GASSDGDKYF FAVRPASGGG RGRRQQVTAS GGCWKPAGGR DKPVVVARCG GSHLVGVKKG  120
MVFVPRQGKA AAAGGGCWVM HEYSLALPMH KKGCLADAGE WVVCRIFQRS SSGSRSPRRP  180
DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-301317520174NAC domain-containing protein 19
3swm_B4e-301317520174NAC domain-containing protein 19
3swm_C4e-301317520174NAC domain-containing protein 19
3swm_D4e-301317520174NAC domain-containing protein 19
3swp_A4e-301317520174NAC domain-containing protein 19
3swp_B4e-301317520174NAC domain-containing protein 19
3swp_C4e-301317520174NAC domain-containing protein 19
3swp_D4e-301317520174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415660.0CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence.
GenBankKJ6902490.0KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-117NAC domain-containing protein 18
TrEMBLA0A0E0E1051e-159A0A0E0E105_9ORYZ; Uncharacterized protein
STRINGOMERI06G12850.11e-160(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-39NAC domain containing protein 83