PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G13860.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 486aa    MW: 51238.8 Da    PI: 5.0654
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G13860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-061354237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++ C+ ++e  + l+C+ +   lC  C  + H        H
  OMERI06G13860.1 13 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 54
                     7899*******9******************999545555555 PP
2CCT431.7e-154484761644
              CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      ++eK+irYesRK +A++R+RvKGrFvk++
  OMERI06G13860.1 448 RYEKHIRYESRKLRADTRKRVKGRFVKSN 476
                      79************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8831259IPR000315B-box-type zinc finger
SMARTSM003361.1E-111259IPR000315B-box-type zinc finger
CDDcd000211.86E-81559No hitNo description
PROSITE profilePS5101710.189433475IPR010402CCT domain
PfamPF062032.5E-10448475IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MKDGGGGGRG QQQQWPCDYC GEAAAALHCR ADAARLCVAC DRHVHAANAL SRKHVRAPLC  60
AACATRPAAA RVASASATGE PAFLCAGCDT GCECDDGAAR VPVEGFSGCP AAAELAASWG  120
LDLPGGCGGG EEEEEEEADD AFFSALDYSM LAVDPVLRDL YVPCDPPEVV VAGGGRRLKG  180
EALGHQLAEM ARREAETAHP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAAATAPAA  240
REAPLPYTSL LMMAPANCTE LMDSDRVGDE DENVLWESTT PSVPPTQIWD FNLGKSRDHN  300
ENSALEVGFG SNNGGFMIKS YNDMLKEISS GTTKDLEDIY DSRYCAAAED IMSTNVCQLS  360
SKNPSTGSNK RKASSCASTI DGPTTSTSHV PAASGALGGS SNDRGSALTK EISFCDQTVV  420
PTGADQRPCT IKIDSETLAQ NRDSAMQRYE KHIRYESRKL RADTRKRVKG RFVKSNGAPD  480
DVSNGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0997220.0AK099722.1 Oryza sativa Japonica Group cDNA clone:J013088K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649825.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0E0E1150.0A0A0E0E115_9ORYZ; Uncharacterized protein
STRINGOMERI06G12890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-19B-box type zinc finger protein with CCT domain