PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G13990.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 274aa MW: 29294.6 Da PI: 4.1055

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G13990.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ OMERI06G13990.3 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6*****************************657888889876 PP
2	zf-B_box	22.9	1.7e-07	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + lC++C ++H+ H++++ OMERI06G13990.3 47 LCDRCVSQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89 7*****************************6688899999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.0E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.94	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.50E-7	4	47	No hit	No description
PROSITE profile	PS50119	8.674	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	8.14E-6	47	90	No hit	No description
SMART	SM00336	0.34	48	90	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVSQPAMVRC 60 LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSNQGI AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL 180 PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE 240 QLFDDAGIDS YFESKEIPSG NSDEVCSLLL MVPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833045	0.0	CT833045.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA219C04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644311.1	0.0	zinc finger protein CONSTANS-LIKE 9 isoform X1
Swissprot	Q9SSE5	8e-71	COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A0E0E137	0.0	A0A0E0E137_9ORYZ; Uncharacterized protein
STRING	OGLUM06G12660.2	0.0	(Oryza glumipatula)
STRING	ORUFI06G12310.2	0.0	(Oryza rufipogon)
STRING	OS06T0298200-01	0.0	(Oryza sativa)
STRING	ONIVA06G13380.1	0.0	(Oryza nivara)
STRING	ORGLA06G0108300.1	0.0	(Oryza glaberrima)
STRING	ORGLA06G0296700.1	0.0	(Oryza glaberrima)
STRING	OBART06G11710.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	3e-73	CONSTANS-like 9