PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G14220.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 445aa    MW: 49133.1 Da    PI: 7.4451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G14220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011114135223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C+k+F++  ++  H+r+H
  OMERI06G14220.1 114 ECQVCHKRFKNDKSMFGHLRSH 135
                      6*******************99 PP
2zf-C2H211.50.00093286308123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C++C++ Fs++  L  H+  H
  OMERI06G14220.1 286 YMCKHCNEEFSTHQALGGHMAGH 308
                      89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037113140IPR007087Zinc finger, C2H2
SMARTSM003550.096113135IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-4114135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-7114135No hitNo description
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-7281308No hitNo description
PfamPF139122.8E-7286311IPR007087Zinc finger, C2H2
SMARTSM003550.081286309IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45286314IPR007087Zinc finger, C2H2
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSGCSWICSL VILQAVCSAC WQVAGANSLR LAAGQIGGVF VYLQDPSRMS RHARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGRSA GEVECQVCHK  120
RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSPQPPP SSSSSLRPVG ESNSSMPTPG  180
ISLTTYEKLA ACVMLTLRRR HDRDQRQLQA PPTTSPSCSN KRKLERAAAG GGEATTIMEG  240
AEGSSRAIVG DEHEHEARRR KKGKRKLKEP REEERKVKKE KKRHPYMCKH CNEEFSTHQA  300
LGGHMAGHHK EERILLKEKQ RERSLVLEKE PERSHHLMEE KHPERGLILE KKQLERSSIV  360
LEKIQLERSS IVLKEKQPDR SLTLKEEQPE VVYQDKIDHT MNWHKTERNE GASYFGGGSN  420
TAPIAQEDSC PPFGFDLNVE APEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259266RKKGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098970.0AK109897.1 Oryza sativa Japonica Group cDNA clone:002-149-F03, full insert sequence.
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.10.0uncharacterized protein LOC107278701
TrEMBLA0A0E0E1740.0A0A0E0E174_9ORYZ; Uncharacterized protein
STRINGORGLA06G0111100.10.0(Oryza glaberrima)
STRINGORGLA06G0241700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-07C2H2 family protein