PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G16280.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 144aa    MW: 15004 Da    PI: 6.0044
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G16280.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS29.78.1e-103384281332
             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                      ++   Er+ll++e + vvacega+ +erhe++++W +++e+  +++v ls++
  OMERI06G16280.6  33 QAPREERVLLREETRGVVACEGAKLVERHERARHWAAWMEADDMEQVGLSYS 84 
                      555679*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.8E-73384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009570Cellular Componentchloroplast stroma
GO:0016868Molecular Functionintramolecular transferase activity, phosphotransferases
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDHVRNSALA ALEGGVAGNK SVAGAGAAPG GAQAPREERV LLREETRGVV ACEGAKLVER  60
HERARHWAAW MEADDMEQVG LSYSGAMHGG EEAATELQVG GAVRPWLLIL LAHEAALRRL  120
RVAAGAVAPP PRSVIGEPAS CSID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652810.0AK065281.1 Oryza sativa Japonica Group cDNA clone:J013002M01, full insert sequence.
GenBankAP0035200.0AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
GenBankAP0047340.0AP004734.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0A9Q04e-95A0A0E0A9Q0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0E1Z04e-95A0A0E0E1Z0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GRC14e-95A0A0E0GRC1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PXY44e-95A0A0E0PXY4_ORYRU; Uncharacterized protein
STRINGONIVA03G29410.27e-96(Oryza nivara)