PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G17180.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17430 Da    PI: 11.4712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G17180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211967250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rie+k +rqvtf+kRr+g++ KA+ELS+L++a +av++fs+ ++ y ++
  OMERI06G17180.1 19 RIEDKPRRQVTFTKRRAGLFRKASELSILTGAAIAVLVFSEANRPYAFA 67
                     8*****************************************9988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-261069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.0481070IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-221177IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-181232IPR002100Transcription factor, MADS-box
PfamPF003191.4E-221966IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MVHPRGRPSK GRQVIEIRRI EDKPRRQVTF TKRRAGLFRK ASELSILTGA AIAVLVFSEA  60
NRPYAFADPS SSLVDDAVLR SRCYAPAPGV HNCEPEALRR AAAEAKAEEA RLRDVAGRRF  120
WWREATNVEA LGEAELPEFA RALGKLRGAV VRRRAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036190.0AP003619.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0577H07.
GenBankAP0043250.0AP004325.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1230_H04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619582.15e-44agamous-like MADS-box protein AGL61
TrEMBLA0A0E0E2A01e-105A0A0E0E2A0_9ORYZ; Uncharacterized protein
STRINGOMERI06G15880.11e-106(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1817844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-20M-type_MADS family protein